Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L13
         (549 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    25   1.2  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   1.6  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   5.0  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       23   6.6  

>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 496 CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 377
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 496 CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 377
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 496 CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 377
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 496 CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 377
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 496 CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 377
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 618 CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 657


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 147 QGRGHQHSPYM*RSTEMPLPVFPS*G 70
           Q  GH HS    +S  +P+PVF   G
Sbjct: 150 QAAGHLHSSVSEKSKTVPVPVFQKVG 175


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 322 CNSICRHSPFKVCDCQVE 375
           C ++C    F  CDC++E
Sbjct: 740 CFALCHCCDFYACDCKME 757


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 162 LSSLXQGRGHQHSPYM*RSTEMPLPVF 82
           ++ L  G+G  H P    +T+ PL V+
Sbjct: 249 INLLINGKGTYHDPKKNETTQTPLEVY 275


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,340
Number of Sequences: 2352
Number of extensions: 10805
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)