Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L12
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 232 QFDVAHTSVLKRAQITLNSILKEIGQPDIPIEKTWRLNERHY 357
           QF+ A   V       LN + K++   D P E+  +L +R+Y
Sbjct: 42  QFEKASNKVFAELFAKLNDVAKKVATEDFPAEQLQKLIDRNY 83


>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = +1

Query: 52  RSEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGY 231
           + ++    K  A   I +IRHG+   + +          L+  GR++A   GK L     
Sbjct: 82  KKKLIEEKKATATRNIFLIRHGQYHLDHEVKM-------LTPLGREQAELLGKRLANSDI 134

Query: 232 QFDVAHTSVLKRAQITLNSILKEI 303
           +F     S + RA  T N ILK +
Sbjct: 135 KFTNMTMSTMVRATETANIILKHL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,350
Number of Sequences: 27780
Number of extensions: 316114
Number of successful extensions: 819
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)