Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L06
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    55   5e-10
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.3  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   7.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 55.2 bits (127), Expect = 5e-10
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
 Frame = +1

Query: 214 VTDCSESNLTEVPYDELSLSVYI--LDLNGNNITTL--KPFPNDIKMRRLQLADNRLTRV 381
           +T    S++   P D + +   +  LDL+ N +  +    F     ++++ L DN +  +
Sbjct: 22  LTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMI 81

Query: 382 EREAFKGLEY--LIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVEG-PFLVSPT 552
            R  F+G  +  L ++  S N++  V    F D   L  + L DN I ++E   F+   +
Sbjct: 82  HRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKS 141

Query: 553 LQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNLXTGVFDILTSI 699
           L+ L+L    I +I  + F N+  L  +DL+ N + +L   +FD + S+
Sbjct: 142 LKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSL 190



 Score = 53.6 bits (123), Expect = 1e-09
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
 Frame = +1

Query: 271 SVYILDLNGNNITTL-KPF--PNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNN 441
           ++ +LDL+ NNIT++ K F  P ++ + +L L  N+L    ++ F  + +L  +DLS N+
Sbjct: 224 NIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNS 283

Query: 442 ISYVDPEAFLDSRGLLNVELQDNPIGNVEGP-FLVSPTLQYLDLSNCNITSINSQFFDNI 618
           +  +D + F +++ L  ++   N I  +    F     L+ +D S+  + S+    F   
Sbjct: 284 LYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRE- 342

Query: 619 TTLMTVDLSNNPLKNL 666
           T L  +D+S+N L  L
Sbjct: 343 TGLERLDVSHNLLGKL 358



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = +1

Query: 400 GLEYLIDIDLSGNNISYVDPEAFLD-SRGLLNVELQDNPIGN-VEGPFLVSPTLQYLDLS 573
           GL+ +  +DLS NNI+ V  + F      L+ + L  N + N  +  F   P LQ LDLS
Sbjct: 221 GLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLS 280

Query: 574 NCNITSINSQFFDNITTLMTVDLSNNPLKNLXTGVFDILTSI 699
           + ++  ++   F N   L  +D S+N +  +   +F  L ++
Sbjct: 281 HNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNL 322



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
 Frame = +1

Query: 220 DCSESNLTEVPYDELSLS----VYILDLNGNNITTLKPFPNDIKMRRLQLAD---NRLTR 378
           D S + L ++P   LSL+    +  LDL+ N+I++L       + + L   D   NRL +
Sbjct: 349 DVSHNLLGKLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQ 408

Query: 379 VEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRG----LLNVELQDNPIGNVEGPFLVS 546
           ++   FKG+  L  ++L  N+   ++    L  +G    LL++ L +  +  V  P L +
Sbjct: 409 IDAGTFKGIPRLASLNLGHNSQLTLEING-LSFQGLEYTLLHLNLDNVSLSQV--PALST 465

Query: 547 PTLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPL 657
           P L  L L+  ++ ++  +   NI++L  ++L  N L
Sbjct: 466 PNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDL 502



 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 550 TLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNLXTGVFDILTSI 699
           TL+     + ++ +  S     +  L  +DLSNN L+N+    F  L S+
Sbjct: 19  TLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSL 68


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 406 EYLIDIDLSGNNISYV 453
           E  +D+DL GN  SYV
Sbjct: 154 ENALDVDLIGNVCSYV 169


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 223 CSESNLTEVPYDELSLSVYILDLNGNNITT 312
           C ESN+     +      Y L+++ NN  T
Sbjct: 79  CIESNMISFYLEATDDFAYFLEVSNNNFKT 108


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 610 QRIEN*WRLYCSYLNRDTAA 551
           +R+EN WR + +  + DT A
Sbjct: 6   ERLENTWRAFTASWSPDTLA 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,505
Number of Sequences: 336
Number of extensions: 3107
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)