Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L06
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    42   8e-05
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    39   8e-04
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    35   0.013
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    33   0.030
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    32   0.069
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   1.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   2.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   6.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.0  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
 Frame = +1

Query: 349 LQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLLNVELQDNPIGNVE 528
           L+ +  +L  + +  F  L+ L+ +DLSGN ++ + P A  +   L ++ L  N I    
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCR 395

Query: 529 GPFLVSPT-LQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNL 666
             + +S + LQ L LS  ++TS++    +N+ +L  +D+ +N + ++
Sbjct: 396 TFYHISLSHLQILVLSRNHLTSLSG--LENVPSLEKLDIRDNSITDV 440



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 553 LQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLKNL 666
           L YL  S+C + SI    F ++ +L+++DLS N L  +
Sbjct: 334 LLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI 371


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
 Frame = +1

Query: 283 LDLNGNNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDP- 459
           LDL+ NNI T++   +   +  L    NR+ R+E    +GL+ L +++L GN I  ++  
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIEN--LEGLDRLTNLELGGNKIRVIENL 166

Query: 460 -------------------EAFLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDLSNCN 582
                              E F   + L  + +Q N I   E    +S  L+ L +S+  
Sbjct: 167 DTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNG 226

Query: 583 ITSINSQFFDNITTLMTVDLSNNPLKNL 666
           +TS +    + +  L  +D+SNN +K+L
Sbjct: 227 LTSFSG--IEVLENLEILDVSNNMIKHL 252


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 283 LDLNGNNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYV-DP 459
           +D   N+I  L  FP   +++ L   +NR+T +  +  K L  L  + L+ N++  + D 
Sbjct: 46  IDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADL 105

Query: 460 EAFLDSRGLLNVELQDNPI 516
           +       L N+   DNP+
Sbjct: 106 DPLASCPQLTNLSCIDNPV 124


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
 Frame = +1

Query: 271  SVYILDLNGNNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYL-IDIDLSGN--- 438
            ++ +L L+ N +T LK     I +R L++++N + ++E + F  L  L +D++       
Sbjct: 758  NLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRPPD 817

Query: 439  --------NISY--VDPEA----FLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDLSN 576
                    N S+   DPEA       S  + N+ L +N    ++   +    ++YL+L+N
Sbjct: 818  IRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLG-VRYLELAN 876

Query: 577  CNITSINSQFFDNITTLMTVDLSNNPLKNL 666
              +  +      ++  L  +DLS+N + ++
Sbjct: 877  VQLKEVPKYIATSMPNLRVLDLSHNYISDI 906



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +1

Query: 187  DC-HYFRINWVTDCSESNLTEVP-YDELSL-SVYILDLNGNNITTLKPFPNDIKMRRLQL 357
            DC H F      + +   L EVP Y   S+ ++ +LDL+ N I+ ++       + RL L
Sbjct: 861  DCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQMIHRLYL 920

Query: 358  ADNRLTRVER--EAFKGLEYLIDIDLSGNNISY 450
              NR+ ++    +    L+ L  +DL  N +++
Sbjct: 921  VGNRIKKMRNLCDILANLKQLNVLDLRMNPLNF 953


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = +1

Query: 199 FRINWVTDC--SESNLTEVPYDELSL-SVYILDLNGNNITTLKPFPNDI-KMRRLQLADN 366
           F+ +++T+   + +NLT +P +   L ++ ILD +GN+I T+ P    + ++R + L DN
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDN 237

Query: 367 RLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDS--RGLLNVELQDNPIG 519
            ++ +  E    L  L  + + GN +  V     ++S   GL+       P+G
Sbjct: 238 MISVIPAE-LGTLFQLKILGIEGNPLQDVYKNQIMESGTAGLIAALRDGCPVG 289


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -1

Query: 396 ERFTFDSG-QSIIS*LQ--SPHLDIVREGLEGCNV-VAVQI*NIHAEAELIIWHFGEV 235
           E+F+F+ G Q   S LQ  +P +D   EG+E C + V  ++ N+ +   L+   FG +
Sbjct: 149 EQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINVRHELMNLASNKTLLQLAFGSI 206


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 259 ELSLSVYILDLNGNNITTLKPFPNDIK-MRRLQLADNRLTRVEREAFKGLEYLIDIDLSG 435
           E  ++V  + +N N+ T++    + ++ ++ L   +  ++ V     K L++L+ +DL  
Sbjct: 680 ETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGK-LKHLVHLDLHA 738

Query: 436 NNISYVDPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTL 555
           NNI  + PE       L  V L  N +  ++ P   S  L
Sbjct: 739 NNIK-IFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKL 777


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 505 DNPIGNVEGPFLVSPTLQYLDLSNCNITSINSQFFDNITTLMT-VDLSNN 651
           ++ IGN+  PFL    LQ+L +   N   I  +  D +  + T  D S N
Sbjct: 262 EHNIGNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRN 311


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 193 HYFRINWVTDCSESNLTEVPYDELSLSVYIL 285
           H  R+N    C    ++ +  D+ SLSVY+L
Sbjct: 741 HLRRVNDTMQCVSQKISNLDKDQQSLSVYVL 771


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 651 IIGEVYCHKGCDIVKELRID---GGYIAVT*IEILQRWRDEERAFDVA 517
           I+GEVY H   D++   R D    G    T  E+   W+ +  A DVA
Sbjct: 5   IVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVA 52


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 474 IQERLGVHITDVVSR*ININQVFQ-ALERFTFDSGQSIIS*LQSPHLDIVREGLEGCNVV 298
           IQE  G H+ D V    N N V Q A+E       Q I+  L+ P + ++     GC V+
Sbjct: 503 IQELDG-HVLDCVCD-QNGNHVIQKAIECIDTGHLQFILRALR-PQIHVLSAHPYGCRVI 559

Query: 297 AVQI*NIHAEAELII 253
              I + H+E +LII
Sbjct: 560 QRAIEHCHSERKLII 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,624
Number of Sequences: 5004
Number of extensions: 56168
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)