Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_L06
(699 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 63 2e-12
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 4.9
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 6.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 8.5
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 63.3 bits (147), Expect = 2e-12
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Frame = +1
Query: 280 ILDLNGNNITTLKP--FPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYV 453
ILDL N+I ++ F + L+L+DN+L V + F GL L + LSGN I+ +
Sbjct: 363 ILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASI 422
Query: 454 DPEAFLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDLSNCNITSINSQFFDNITTLMT 633
DP AF + L ++L N + +V L+ LDL I++ + F N+ L
Sbjct: 423 DPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTG 482
Query: 634 VDLSNNPLKNLXTGV 678
+ L N + NL G+
Sbjct: 483 LRLIGNDIGNLSRGM 497
Score = 58.0 bits (134), Expect = 8e-11
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Frame = +1
Query: 280 ILDLNGNNITTLK----PFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNIS 447
+L+L GN + + + F I++ L L+ N LT ++ FK L +L +DL N+I
Sbjct: 313 VLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID 372
Query: 448 YVDPEAFLDSRGLLNVELQDNPIGNVEGP-FLVSPTLQYLDLSNCNITSINSQFFDNITT 624
++ AFL L +EL DN + V F L L LS I SI+ F N +
Sbjct: 373 RIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSD 432
Query: 625 LMTVDLSNNPLKNLXTGVFDI 687
L +DLS N L ++ + D+
Sbjct: 433 LKELDLSGNELTSVPDALRDL 453
Score = 49.6 bits (113), Expect = 3e-08
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +1
Query: 283 LDLNGNNITTLKPFPNDIKM-RRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDP 459
LDL+GN +T++ D+ + + L L +NR++ +F+ L+ L + L GN+I +
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495
Query: 460 EAFLDSRGLLNVELQDNPIGNVEG-PFLVSPTLQYLDLSNCNITSINSQFFDNITTLMTV 636
D L + L N + +VE F + L+ + L ++ IN F +I +L+ +
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDING-VFTSIASLLLL 554
Query: 637 DLSNNPLK 660
+LS N ++
Sbjct: 555 NLSENHIE 562
Score = 44.8 bits (101), Expect = 8e-07
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 6/176 (3%)
Frame = +1
Query: 145 FNGDSFELECPDECDCHYFRINWVT---DCSESNLTEVPYDELSLSVYILDLNGNNITTL 315
F+ E+ CP C C+ R W T DCS + E+P + + + L+GN + L
Sbjct: 752 FDACDCEMTCPAGCKCYNDR-TWNTNAVDCSGLGVEEIPR-RIPMDATEVYLDGNVLREL 809
Query: 316 KP--FPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPEAFLDSRGLL 489
+ F MR L + + + ++ F GL L + L N I + F L
Sbjct: 810 QNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLR 869
Query: 490 NVELQDNPIGNVEG-PFLVSPTLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNP 654
+ LQ+N IG + FL +L+ L LS + + L+ + L +NP
Sbjct: 870 ELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNP 925
Score = 27.1 bits (57), Expect = 0.17
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 220 DCSESNLTEVPYDELSLSVYILDLNGNNITTLKP--FPNDIKMRRLQLADNRLTRVE 384
D S + +TE+ + SV +L +N N I ++P F + + + R+ + N + +E
Sbjct: 601 DASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETME 657
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.2 bits (45), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 377 LVSRLSANCNLLILISFGKGLRVVMLLPFKSRIYTLRLSSSYGT 246
LV +L CN L++ L V +L+ + +Y + + S+GT
Sbjct: 68 LVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWSFGT 111
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 6.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 259 ELSLSVYILDLNGNNITTLKPFPNDIKMRRLQLADNRLTRVEREAFKGLEYLIDIDLSGN 438
++ LS + NN T + DIK+ +L +R+E EA + E + +L G
Sbjct: 703 QVELSNMYRTMEANNYDTAEEAIRDIKIGKLMAFIWDSSRLEFEAAQDCELVTAGELFGR 762
Query: 439 N 441
+
Sbjct: 763 S 763
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.4 bits (43), Expect = 8.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 535 FLVSPTLQYLDLSNCNITSINSQ 603
FL PT+ Y ++ +I SIN +
Sbjct: 25 FLGQPTIVYFHVTVLSIDSINEE 47
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,095
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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