Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L03
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.46 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.80 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   1.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -1

Query: 359 NACIREALGDLGGGNYSGHRMSITHRFAHSDYVGNNVLSFKGPHVCADTTEPYLNLIGDT 180
           N  I E++ DL    Y+ H M        + Y+ + +      H   + TE +LN+ GD 
Sbjct: 273 NLVINESIIDLSQQTYNVHLMWSKPDLIPNYYIAHFINIDPENH---NKTEIFLNITGDK 329

Query: 179 HTTGFMHI 156
             + F H+
Sbjct: 330 TNSVFEHV 337


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 264 IVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGN 386
           I+++G        +A +  +PE+  +   +  EYF  YG N
Sbjct: 99  IISIGGWNAGNAILAPIAASPELRANLIASSFEYFEKYGFN 139


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 264 IVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTY 377
           ++++G    +     A    PE  K+ + + +E+F TY
Sbjct: 98  MLSVGGATASPDSFVAAANDPEKMKNMTSSAIEFFETY 135


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 325 GVVITAATGCPLPIGLPI 272
           G  + AA+G P P  LPI
Sbjct: 35  GFWLAAASGAPHPAALPI 52


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 325 GVVITAATGCPLPIGLPI 272
           G  + AA+G P P  LPI
Sbjct: 35  GFWLAAASGAPHPAALPI 52


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 572 PVGDKFDAYKQTPTADIADESMF 504
           P  D  D+ ++TP + ++  SMF
Sbjct: 9   PKRDMLDSQEKTPLSSVSYPSMF 31


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -1

Query: 320 GNYSGHRMSITHRFAHSDYVGNNV 249
           G+ +   + +TH  AH+ Y  +++
Sbjct: 329 GHSTSPNLPLTHNIAHNPYPSHSI 352


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 262 SGTTS*VSKAHMCVPTRPNPT*TSSAIHTPPASCTYSY 149
           S TT   +      P+  +P  +SS+  T PA+  Y Y
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPY 63


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 262 SGTTS*VSKAHMCVPTRPNPT*TSSAIHTPPASCTYSY 149
           S TT   +      P+  +P  +SS+  T PA+  Y Y
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPY 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,943
Number of Sequences: 336
Number of extensions: 3924
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)