Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_L03
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 134 2e-32
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 117 2e-27
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 116 3e-27
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 101 1e-22
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 85 9e-18
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 64 1e-11
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 36 0.004
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 30 0.28
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 28 1.1
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 6.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.0
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 134 bits (323), Expect = 2e-32
Identities = 71/179 (39%), Positives = 103/179 (57%)
Frame = +3
Query: 54 KXKXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMW 233
K G + I E++ S GG I P GY K + + E G + I DE Q G GR G+ M+
Sbjct: 206 KQSTGSLACMIVETILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGS-MF 264
Query: 234 AFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANA 413
+FE +VPDI+T+ K +G G +AAVIT+ EI K D G ++ T+ +P+ AI +
Sbjct: 265 SFEHHGIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGST 324
Query: 414 VLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETXTPA 590
VL V++ +NL+E+A G L S LK KH L+ DVRG GL G+E+ + + P+
Sbjct: 325 VLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPS 383
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 117 bits (281), Expect = 2e-27
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 1/213 (0%)
Frame = +3
Query: 72 VCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFETQD 251
V AF+ E +Q G ++P DGY + Y+ + IADEVQ G R G M E +
Sbjct: 207 VAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTG-KMLCIEHSN 265
Query: 252 VVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVI 428
V PD+V +GK + G +PV+AV+++ EI +F + G + +TYGGNP+ A++ A L+V+
Sbjct: 266 VKPDVVILGKAISGGVYPVSAVLSSREIMLNF-EPGT-HGSTYGGNPLGAAVSIAALEVV 323
Query: 429 EEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETXTPATAEAKH 608
+EE L ERA+ +G R ++ K +V VRGRGL V V D TA
Sbjct: 324 KEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRGLLNAV--VIDESKTNGRTAWDLC 379
Query: 609 VVNXMREXNILIXRDGPDSNVLKFXPPMVFTTQ 707
++ MR +L N+++F PP+V T +
Sbjct: 380 LI--MRSRGVL--AKPTHGNIIRFSPPLVITEE 408
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 116 bits (280), Expect = 3e-27
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Frame = +3
Query: 72 VCAFIAESLQ-SCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFETQ 248
V AF+AE++ +C G P GYFK + + + G + DEV G GR GT M A+E +
Sbjct: 216 VAAFVAETVSGACTGCATPVPGYFKAMRKVCDKYGVIFYLDEVMSGIGRTGT-MHAWEQE 274
Query: 249 DVVPDIVTMGKPMGNGH-PVAAVITTPEIAKSFS--DTGVEYFNTYGGNPVSCAIANAVL 419
V PDI ++ K +G G+ P++ + I F D + F TY +P++C+ A AV
Sbjct: 275 GVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFEQKDAAMAGFFTYQAHPIACSAALAVQ 334
Query: 420 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRET 578
++ ++L+ERA+ +G +L + + H VG++RGRGLF G+E+V D+ T
Sbjct: 335 TILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIVKDKAT 387
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 101 bits (242), Expect = 1e-22
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Frame = +3
Query: 48 EIKXKXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTH 227
++ G +FI E +Q GG I+PP GY + E + + DE+Q G GR G
Sbjct: 229 QVALSSGMYRSFIVEPIQGEGGVIVPPPGYLAKARELCTKYDTYLVLDEIQTGCGRTG-K 287
Query: 228 MWAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEI---AKSFSDTGVEYFNTYGGNPVS 395
WA E ++++PD + K G P A I T E+ A + +T + TY N +
Sbjct: 288 FWACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLG 347
Query: 396 CAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVELVTDR 572
A A +D I + +LL R ++G + R L+ K ++ DVRGRG+ VG+E
Sbjct: 348 LAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIP 407
Query: 573 ETXTPATAE--AKHVVNXMRE-XNILIXRDGPDSNVLKFXPPM 692
E+ E A +VN + + ++ + + +V +F PP+
Sbjct: 408 ESVQEEFGEYYATPIVNDLADTYHVQVYCSLNNPSVFRFLPPL 450
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 85.0 bits (201), Expect = 9e-18
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +3
Query: 78 AFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFE-TQDV 254
A I E +Q GG + + + + G I DE+Q G GR G +WA +DV
Sbjct: 226 AVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD-LWAHSIVKDV 284
Query: 255 V-PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIE 431
PDI+T+ KP+ NG P+ A I + +IA E+ +T+GGNPV+C + ++ +
Sbjct: 285 ASPDIITVAKPLANGLPIGATIVSSKIAAEIHPG--EHGSTFGGNPVACRVGTFCVNELG 342
Query: 432 EENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVE 557
+L+ + L SR +D K+ L+ GRGL +G++
Sbjct: 343 SSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQ 385
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 64.5 bits (150), Expect = 1e-11
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Frame = +3
Query: 72 VCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFETQD 251
V A I E +QS GG +F ++ + + I DEVQ G G GT +WA E +
Sbjct: 263 VVACIIEPIQSEGGDNHASPDFFHKLQATLKKHDVKFIVDEVQTGVGSTGT-LWAHEQWN 321
Query: 252 VV--PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDV 425
+ PD+VT K AA I ++A ++FNT+ G+P + +L
Sbjct: 322 LPYPPDMVTFSKKFQ-----AAGIFYHDLA--LRPHAYQHFNTWMGDPFRAVQSRYILQE 374
Query: 426 IEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRG 539
I++++LL VG+ L + E+L KH + ++RG+G
Sbjct: 375 IQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRGKG 413
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 36.3 bits (80), Expect = 0.004
Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 4/165 (2%)
Frame = +3
Query: 72 VCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVC-IADEVQVGFGRVGTHMWAFETQ 248
+ A I E++Q GG I P D F + + E + I DEV G + +
Sbjct: 204 IAAVIVEAMQGAGGAI-PADKEFMQTIQLECEKNDIVFILDEVMTSRLSPGGLQQIYCLK 262
Query: 249 DVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDT---GVEYFNTYGGNPVSCAIANAVL 419
PD+ T+GK +G G P A +I F + + T+ + ++ L
Sbjct: 263 ---PDLTTLGKYLGGGLPFGAFGGRADIMSCFDPRLPGSLSHSGTFNNDTLTLTAGYVGL 319
Query: 420 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 554
+ ++R + +G+ L E H ++ + G G + +
Sbjct: 320 TELYTPEAVKRLNALGDGLRKDIESYCHNTKM--SITGLGSIMNI 362
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 469 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPXL 585
+IY + I S NIDSS V + AS +SP+ P L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 330 IAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENL 443
I K++ DT E+ GNPV I N++LD+ + ENL
Sbjct: 532 IEKTYVDTVDEF-----GNPVKVLIDNSMLDLTDMENL 564
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +3
Query: 294 GHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNH 473
GH AV++ PEI +DT F +Y + + + V +L RV
Sbjct: 810 GHYDDAVLSVPEIFIQITDTSTS-FGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKA 868
Query: 474 LLSRCEDLKHKHRLV 518
+ RC++L H ++
Sbjct: 869 V--RCDELMHLKNVI 881
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.0
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = -2
Query: 391 TGLPPYVLKYSTPVSEKLLAISGVVI-TAATGCPLPIGLPIVTMSGTTS*VSKAHMCVPT 215
T LP + VS + A S V T +T C P + IVT SG+TS +
Sbjct: 138 TFLPDSTTTSGSQVSNAVEASSTFVADTTSTSCN-PATVLIVTTSGSTSTSCPPPTTILI 196
Query: 214 RPNPT*TSSAIHTPPASCTYSYTRLKYPSGGII 116
PT T++ P S T + T PS G +
Sbjct: 197 VTVPTTTTTTTVGYPGSVTTTLTGT--PSNGTV 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,019
Number of Sequences: 5004
Number of extensions: 62551
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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