Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L03
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)          232   2e-61
SB_12565| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   4e-13
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   8e-07
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_10591| Best HMM Match : Spp-24 (HMM E-Value=6)                      31   0.92 
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)                    29   2.8  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   4.9  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)                   28   8.5  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    28   8.5  
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
          Length = 252

 Score =  232 bits (568), Expect = 2e-61
 Identities = 101/150 (67%), Positives = 123/150 (82%)
 Frame = +3

Query: 81  FIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFETQDVVP 260
           FI ES+Q CGGQI+ P  + K  +++V  AGGVCIADEVQVGFGRVG H WAFETQDVVP
Sbjct: 100 FICESMQGCGGQIVYPQNFMKEAFKHVRAAGGVCIADEVQVGFGRVGNHFWAFETQDVVP 159

Query: 261 DIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEEN 440
           DIVT+GKP+GNGHP+A V+TTPEI++SF+ TG+ YFNTYGGNPVSCA+ NAVLDVIEEE 
Sbjct: 160 DIVTLGKPIGNGHPLACVVTTPEISESFAATGMAYFNTYGGNPVSCAVGNAVLDVIEEEG 219

Query: 441 LLERASRVGNHLLSRCEDLKHKHRLVGDVR 530
           L + A +VG  L+ + + L+ KH L+GDVR
Sbjct: 220 LQQHALKVGTQLIDKLKGLQQKHPLIGDVR 249


>SB_12565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/52 (61%), Positives = 39/52 (75%)
 Frame = +3

Query: 375 YGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVR 530
           YGGNPVSCA+ NAVLDVIEEE L + A  VG  L+ + + L+ KH L+GDVR
Sbjct: 1   YGGNPVSCAVGNAVLDVIEEEGLQQHALEVGTQLIDKLKRLQQKHLLIGDVR 52


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
 Frame = +3

Query: 348 DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGD 524
           D     FNT+ G+P    +   VL VI ++NL+E  + VG  LL   + ++ +H   V  
Sbjct: 296 DEPFRIFNTWMGDPNKMILLREVLKVIRKDNLIEYTADVGKELLKGLQYIEERHPEFVSK 355

Query: 525 VRGRGLFVGVELVTDRETXTPATAEAKHVVNXMREXNILIXRDGPDSNVLKFXPPMVF 698
            RG G F G++L  D ET T         +  MR  N  +  DG     ++F P ++F
Sbjct: 356 ARGLGTFCGIDL-PDLETRT-------KFLGLMR--NNGVDMDGCGVKTVRFRPALIF 403


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 36/114 (31%), Positives = 59/114 (51%)
 Frame = +3

Query: 360 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRG 539
           E+ +TYGGNP+   +A   L V+EEE L ER++ +G   LS  + L     +V   RG+G
Sbjct: 195 EHGSTYGGNPLGAKVAMEALRVLEEEKLSERSAELGKVFLSAMQKL--NPNVVELARGKG 252

Query: 540 LFVGVELVTDRETXTPATAEAKHVVNXMREXNILIXRDGPDSNVLKFXPPMVFT 701
           L   + +    +        A  V   +R+ N L+ +   D ++++F PP+V T
Sbjct: 253 LMNAIVIKPSDD------CNAWKVCLRLRD-NGLLAKPTHD-HIIRFTPPLVIT 298



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 78  AFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADE 194
           AF+ E +Q   G ++P  GY K V +   +   + IADE
Sbjct: 157 AFMVEPIQGEAGVVVPDAGYLKGVRDLCDKYNVLFIADE 195


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
 Frame = +3

Query: 321 TPEIAKSFSDTGVEYFNTYGG--NPVSCAIANAVLDVI---------------EEENLLE 449
           T ++ K F     E     GG  +P  C++  A L+VI               + E L E
Sbjct: 236 TVQLPKGFLKKAYELIRKRGGLCSPTRCSVGLAALEVITGGLRVTVSCQTLTIDNEGLQE 295

Query: 450 RASRVGNHLLSRCEDLKHKHR-LVGDVRGRGLFVGVELVTDRET 578
             S VG   L     L+ +    VGDVRG+GL  G+ELVTDR +
Sbjct: 296 NCSTVGTRFLRGLRKLQDEFPDFVGDVRGKGLMTGMELVTDRNS 339



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 90  ESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVG 206
           +S    GG +  P G+ K+ YE + + GG+C      VG
Sbjct: 228 DSEPGVGGTVQLPKGFLKKAYELIRKRGGLCSPTRCSVG 266


>SB_10591| Best HMM Match : Spp-24 (HMM E-Value=6)
          Length = 225

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 36  ISXNEIKXKXGGVCAFIAESLQSCGGQIIPPDGYF---KRVYEYVHEAGGVCIADEVQV 203
           +   E+K K   V   +  +L SC  +I     Y    + ++EYV   GG+C+ D+  +
Sbjct: 98  MQAKEVKKKGNRVLGVLQRNLSSCSVRI-KEQAYMSLVRPIFEYVRWRGGLCLVDKSNI 155


>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1317

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 513 LVGDVRGRGLFVGVELVTDRETXTPATAEAKHVVNXMRE-XNILIXRDGPDSNVLK 677
           ++GD RG+      E++   ET   A A+    VN + E  N L+  + P+S  +K
Sbjct: 680 MMGDERGKDEASATEMLKRHETLEAAIADYAETVNELGETANGLVESNHPESEQIK 735


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = -2

Query: 382 PPYVLKYSTPVSEKLLAISGVVITAATGCPLPIGLPIVTMSGTTS*VSKAHMCVPTRPNP 203
           PP V   S+ V   + A    V   ++G P P+  P  ++  ++S V       P  P P
Sbjct: 404 PPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVFASSSGVPTPVTAPPPAPPP 463

Query: 202 T--*TSSAIHTPPASCTYSYTRLKYPSGGIICP 110
           +    SS + TP A+   S   +  PS G+  P
Sbjct: 464 SVFAPSSGVPTPVAAPPPS---VFAPSSGVPTP 493


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 212 TEPYLNLIGDTHTTGFMHIFVYTF---EISVRRYNLSPTAL*TLRYEST 75
           T+P L+++  TH T  +H+  YT+    + V  Y  S  AL  L +  T
Sbjct: 387 TKPALHVLHYTHNTRALHVLHYTYTKLALHVLHYTHSKRALHVLNFTHT 435


>SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)
          Length = 629

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 339 SFSDTGVEYF-NTYGGNPVSCAIANAVLDVIEEENLLER 452
           SF  TG E    ++  +PV CA    + D + EENLL R
Sbjct: 472 SFKTTGREVAPKSHHLDPVFCAHLEPIYDRLSEENLLRR 510


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 339 SFSDTGVEYF-NTYGGNPVSCAIANAVLDVIEEENLLER 452
           SF  TG E    ++  +PV CA    + D + EENLL R
Sbjct: 684 SFKTTGREVAPKSHHLDPVICAHLEPIYDRLSEENLLRR 722


>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 220 PTRPNPT*TSSAIHTPPASC 161
           PTRPN T T+S   TP  SC
Sbjct: 39  PTRPNTTATTSPTPTPKLSC 58


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 385 LPPYVLKYSTPVSEKLLAISGVVITAATGCPLPIGLPIVTM 263
           LP Y++  +TP   ++   +   +      PLP+ +P+ T+
Sbjct: 832 LPRYIVPVATPPPVRVTVATPPPVRVPAATPLPVRVPVATL 872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,633,986
Number of Sequences: 59808
Number of extensions: 545879
Number of successful extensions: 1366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)