Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_L03
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 224 4e-59
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 200 1e-51
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 106 1e-23
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 106 1e-23
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 33 0.15
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 31 0.61
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 1.4
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 2.5
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 2.5
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 5.7
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 7.5
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 28 7.5
AC006619-2|AAK68254.1| 434|Caenorhabditis elegans Hypothetical ... 27 9.9
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 224 bits (548), Expect = 4e-59
Identities = 110/221 (49%), Positives = 145/221 (65%), Gaps = 3/221 (1%)
Frame = +3
Query: 45 NEIKXKXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGT 224
N+++ + GV A+ AE+LQSCGGQ+IPP YFK V +V GG+ I DEVQ GFGR+G
Sbjct: 227 NDVESRQCGVAAYFAEALQSCGGQVIPPKDYFKDVATHVRNHGGLMIIDEVQTGFGRIGR 286
Query: 225 HMWAFETQD--VVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSC 398
WA + D +PDIVTMGKPMGNG PV+AV T EIA + V YFNTYGGNPV+C
Sbjct: 287 KYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVATRKEIADALGGE-VGYFNTYGGNPVAC 345
Query: 399 AIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRET 578
A +V+ V+++ENLLE + ++G L DL+ KH +GD+RG GLF G++LV DR T
Sbjct: 346 AAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKHECIGDIRGVGLFWGIDLVKDRNT 405
Query: 579 XTPATAEAKHVVNXMRE-XNILIXRDGPDSNVLKFXPPMVF 698
P A + +R+ IL+ DGP +N+LK PP+ F
Sbjct: 406 REPDQKLAIATILALRKSYGILLNADGPHTNILKIKPPLCF 446
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 200 bits (487), Expect = 1e-51
Identities = 98/211 (46%), Positives = 136/211 (64%)
Frame = +3
Query: 69 GVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAFETQ 248
G AF+ ES+Q GG + P GY K+ YE V + GG+ IADEVQ GFGR+G+H W FE+Q
Sbjct: 220 GPAAFLIESIQGVGGTVQYPHGYLKKSYESVQKRGGLAIADEVQTGFGRLGSHFWGFESQ 279
Query: 249 DVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVI 428
D +PD+VTM K +GNG P+ AV+T+ EIA SF+ + YFNTYGGNP++ + AVL+VI
Sbjct: 280 DALPDMVTMAKGIGNGFPLGAVVTSKEIADSFNKS--LYFNTYGGNPLASVVGKAVLEVI 337
Query: 429 EEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETXTPATAEAKH 608
EEE L E ++ VG++ L + + +GDVRG+GL +GVEL+ D + A A+
Sbjct: 338 EEEKLQENSAVVGDYFLKQLAAI--DDATIGDVRGKGLMIGVELI-DEQGKPLAAAKTAA 394
Query: 609 VVNXMREXNILIXRDGPDSNVLKFXPPMVFT 701
+ + +LI + G NVL+ PPM T
Sbjct: 395 IFEDTKNQGLLIGKGGIHGNVLRIKPPMCIT 425
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 106 bits (255), Expect = 1e-23
Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +3
Query: 60 KXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAF 239
K V AF+ E +Q G ++P GY K V + + + I DEVQ G GR G + A
Sbjct: 201 KDKNVAAFMVEPIQGEAGVVLPDPGYLKGVSDLCKKYNVLFITDEVQSGLGRSGK-LLAH 259
Query: 240 ETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAV 416
+V PDIV +GK + G +PV+AV+ + + E+ +TYGGNP++C +A A
Sbjct: 260 YHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG--EHGSTYGGNPLACKVAIAA 317
Query: 417 LDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 554
L++++EE L+E ++ +G+ L+S+ + L +V VRG+GLF +
Sbjct: 318 LEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAI 361
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 106 bits (255), Expect = 1e-23
Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Frame = +3
Query: 60 KXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGTHMWAF 239
K V AF+ E +Q G ++P GY K V + + + I DEVQ G GR G + A
Sbjct: 136 KDKNVAAFMVEPIQGEAGVVLPDPGYLKGVSDLCKKYNVLFITDEVQSGLGRSGK-LLAH 194
Query: 240 ETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAV 416
+V PDIV +GK + G +PV+AV+ + + E+ +TYGGNP++C +A A
Sbjct: 195 YHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG--EHGSTYGGNPLACKVAIAA 252
Query: 417 LDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 554
L++++EE L+E ++ +G+ L+S+ + L +V VRG+GLF +
Sbjct: 253 LEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAI 296
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 60.9 bits (141), Expect = 9e-10
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Frame = +3
Query: 45 NEIKXKXGGVCAFIAESLQSCGGQIIPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRVGT 224
+E K + V A I E +Q+ GG +F+ + + + G V I DEVQ G G G
Sbjct: 262 SEWKRRDNDVAAIIVEPIQAEGGDHYGSPAFFQGLRDITSKHGIVFIVDEVQTGGGATG- 320
Query: 225 HMWAFETQDV--VPDIVTMGKP-MGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVS 395
+WA + ++ PD+VT K + G+ + E +NT+ G+P
Sbjct: 321 DIWAHDHWNLSSPPDMVTFSKKLLTGGYFYGEHLRVKE--------AYRIYNTWMGDPTK 372
Query: 396 CAIANAVLDVIEEENLLERASRVGNHLLSRCEDLK-HKHRLVGDVRGRGLFVGVE 557
+ ++VI+ + L+E++ VG R +L+ + RGRG F V+
Sbjct: 373 LLLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKLDQARGRGTFAAVD 427
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
protein D2045.2 protein.
Length = 1792
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +3
Query: 288 GNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIA--NAVLDVIEEENLLERASR 461
G+ HP+ + + +AK F D EY G VSC L+ EEE +
Sbjct: 397 GSRHPILVLNDSDVVAKMFEDLSTEYQEDIAGAIVSCLTTWLPLFLESTEEELRAKLREV 456
Query: 462 VGNHLLS-----RCEDLKHKHRLVGD 524
+ H+ S R LK+ L+G+
Sbjct: 457 ISEHIRSDFPNCRLAALKYAEALIGE 482
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 326 GGGNYSGHRMSITHRFAHSDYVGNNVLSFK---GPHVCADTTEPYLNLIGDTHTT 171
GGG SG + R + DY + L F P VC EPY N I THTT
Sbjct: 140 GGGTGSGFTSLLMERLS-VDYGKKSKLEFSIYPAPQVCTAVVEPY-NSILTTHTT 192
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -2
Query: 388 GLPPYVLKYSTPV--SEKLLAISGVVITAATGCPLPIGLPIVTMSGTTS*VSKAHMCVPT 215
G PP LK T + + AI I++ T P P+ P VT+ + + H T
Sbjct: 1398 GTPPSPLKPKTKLGLTSHPSAIPPWAISSKTLAP-PVAPPTVTVPSNIAPSTTGHQSQQT 1456
Query: 214 RPNPT*TSSAIHTPP 170
RP PT I TPP
Sbjct: 1457 RPTPTTHRPGI-TPP 1470
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 120 IPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRV 218
+PP G ++ + +++ +AG VC AD + G G V
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVV 162
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 120 IPPDGYFKRVYEYVHEAGGVCIADEVQVGFGRV 218
+PP G ++ + +++ +AG VC AD + G G V
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVV 162
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -2
Query: 295 PLPIGLPIVTMSGTTS*VSKAHMCVPTRPNPT*TSSAIHTPPASCTYSYTRLKYP 131
PLP P+ +++ +S + + + P+ P+ TSS I +PP++ + S K P
Sbjct: 198 PLP---PLSSITSISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTP 249
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 268 TMSGTTS*VSKAHMCVPTRPNPT*TSSAIHTPPA--SCTYSYTRLKYPSGG 122
T T S A C T PT +S+++H+ A S T T +P+GG
Sbjct: 548 TKETRTEITSDAEGCKKTSSTPTPSSTSVHSTTATPSTTPGTTTYNWPTGG 598
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 489 EDLKHKHRLVGDVRGRGLFVGVELVTDRETXTPATAEAKH 608
E + H +VG G +V V + DRE P + A H
Sbjct: 90 EAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALH 129
>AC006619-2|AAK68254.1| 434|Caenorhabditis elegans Hypothetical
protein C46C11.2 protein.
Length = 434
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +3
Query: 303 VAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLS 482
+A ++ EI K+++ + V G S + N + ++ R + G+H
Sbjct: 334 IACIVEQDEIGKAYAISSVA--QKLAGIAQSLVLQNIYIATVDWYQARFRVASYGSHQFR 391
Query: 483 RCEDLKHKHRLVGDVRGR 536
RC +L H R G R R
Sbjct: 392 RCWNLFHSTR-YGKTRER 408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,754
Number of Sequences: 27780
Number of extensions: 386775
Number of successful extensions: 904
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -