Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L03
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 554 DAYKQTPTADIADESMFMLQIFTPT 480
           D YK TP   +A E MF+ +    T
Sbjct: 137 DKYKPTPLGAVATEKMFVARHLAET 161


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 345 SDTGVEYFNTYGGNPVSCAIANAVLD 422
           ++TGV+YF     N ++C   N  L+
Sbjct: 306 TNTGVDYFTQINRNGIACWDTNTELN 331


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 303 VAAVITTPEIAKSFSDTGVEYFNTYGGNPVSC 398
           V  +  T  IAK  S  GV +F     + + C
Sbjct: 299 VQDIFNTESIAKIMSKNGVLFFGLMNNSAIGC 330


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 297 HPVAAVITTPEIAKSFSDTGVEYF 368
           H    V   P I KSF +  VEYF
Sbjct: 129 HTGKVVWKPPAIYKSFCEIDVEYF 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 381 GNPVSCAIANAVLDVIEEENLLERAS 458
           G P S A A           LLERAS
Sbjct: 900 GEPTSAAFAQGFATAASSPGLLERAS 925



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 661 TVTY*SLXPPWCL 699
           T TY +L P WCL
Sbjct: 477 TGTYPTLLPQWCL 489


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 AFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSD 350
           A+E   +    ++   P G+     ++ITTPEI K   D
Sbjct: 263 AYEMHQISKKKLSPATPKGSK---CSMITTPEIKKEVED 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,746
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)