Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L02
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    29   0.61 
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.3  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   5.7  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   7.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   10.0 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   10.0 
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    25   10.0 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   10.0 

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 495 NRKNLSPELSSTYLGRAVVRTGGGRDSSAKPIRIKTRTINEIPHDISCIKCPRDRTLIAK 674
           N    +PE+S TY  R    + G R  + +PI    +      H   C+   +D  L+ K
Sbjct: 464 NANLCAPEMSPTYTARHRSNSAGSRFDAYEPI---PQLYTHFSHSSECLSVNQDTELLGK 520

Query: 675 V 677
           +
Sbjct: 521 I 521


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 561 GGRDSSAKPIRIKTRTINEIPHDISCIKCPRDRT 662
           GGR+ S   +R+KTR  NE       +  P D T
Sbjct: 42  GGREDSNVYVRMKTRAANEAGISCEHVNFPEDIT 75


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 654 DRTLIAKVGVSXVMLQPPRLQTCSGRKAPRDFKFVTKYGPKL 779
           D T +AKV  +   LQ  R+Q CS   +  DF  +    PKL
Sbjct: 110 DNTNVAKVPDTLQWLQRERMQKCSSIGSGNDFAMI---NPKL 148


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 32  FTNGWLLRGIKNIKF 76
           F N WL +GI+NI F
Sbjct: 90  FINAWLFKGIENITF 104


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 271 LHSVFKLVDQF*ISIAIVESMIMTLVAVGSPDNMRRCNFYTI 396
           +HS FK   +  IS A V+++  T+V      +   CNF +I
Sbjct: 180 VHSFFKENTEIRISSATVDAVFNTVVFESQNSSDSDCNFVSI 221


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 319  IVESMIMTLVAVGSPDNMRRCNFYTIPQRLPLRRRRSKS---TSHEKTHASSINLI 477
            I++S + T+      D+     F  IP+ L   RRR        H++ H SS+  I
Sbjct: 1294 IMQSALTTIGETTDVDSSSASFFLEIPKALGFHRRREAQKFRNQHKELHFSSLEQI 1349


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 412 LRRRRSKSTSHEKTHASSINLIYIFKKLIG 501
           L +R  K T  EKT+ASS+ L  ++  ++G
Sbjct: 295 LDKRIPKKTLVEKTYASSMELQELYNAVVG 324


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 557  WWW-KGQFREAYSDKNKNNKRN 619
            WWW +GQ R+A S+ N +   N
Sbjct: 1700 WWWHQGQHRKAISELNFSLNNN 1721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,948
Number of Sequences: 5004
Number of extensions: 65170
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)