Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L02
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53053| Best HMM Match : Rho_N (HMM E-Value=5.8)                     31   1.5  
SB_12075| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)         28   8.1  

>SB_53053| Best HMM Match : Rho_N (HMM E-Value=5.8)
          Length = 265

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 SFQTRRSVLDIDRYRRKYDHDVGSRGFTRQHATMQFLYN 395
           + + +R+ ++I RY  +  H    + F  Q A+ Q LYN
Sbjct: 31  ALEDKRAAMEISRYEDQQRHQAQEQRFRSQQASTQMLYN 69


>SB_12075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 643 LMQLMSWGISFIVLVFIRIGFAELSLPPPVLTTARPK*VD 524
           L Q ++W  SF V V++++G  +   P  +LT A P  VD
Sbjct: 19  LSQPLAWFYSFTVTVWLKMGAVDNGDPAMILTYATPTKVD 58


>SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)
          Length = 828

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 358 SPDNMRRCNFYTIPQRLPLRRRRSKSTSHEKTHASSINLIYIFKK 492
           SP+N+R  N     QRLPL+   ++  S    +A SIN   +F K
Sbjct: 227 SPNNVRNPNNLVTIQRLPLKATNARHMSMCLLNARSINNKALFIK 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,308,476
Number of Sequences: 59808
Number of extensions: 485764
Number of successful extensions: 1166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)