Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L01
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     33   0.20 
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             33   0.36 
SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)               31   1.1  
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  29   5.8  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 378 FLAEYAGPLFVYLWVYQRPWILYGTQTSS 464
           F+AEYAGPL VYL++Y RP  +YG   +S
Sbjct: 2   FMAEYAGPLAVYLFLYARPSFIYGADAAS 30


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 162 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGS 329
           K+ +  + ++  +K+KI+    K  YP    +KL   GK L D++ L   NI + S
Sbjct: 80  KVEIGEDETVLKLKQKIEADKGKDAYPHGN-IKLIYAGKILNDDNPLKEYNIDEKS 134


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 192 KNVKEKIQQSVKKSL-Y-PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 341
           +N+K  I+ S + S+ Y P  + + ++  GKT  D+  L+SLN++ G+K+ +
Sbjct: 735 RNMKYDIRVSARNSMGYGPPSKVVSVKYTGKTPTDDIKLSSLNLKQGAKIMM 786


>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
          Length = 414

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 258 KLEAKGKTLKDEDTLNSLNIQDGSKLFL 341
           +L  KGKTL D+ +L+   I DGSKL+L
Sbjct: 145 RLVYKGKTLADDCSLDEYLIGDGSKLYL 172


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/49 (42%), Positives = 34/49 (69%)
 Frame = +3

Query: 183 SSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGS 329
           +++KNVKEK+++S  K+LY    A KLE++ K L+D+  +N LN +  S
Sbjct: 14  TTLKNVKEKLEES--KNLY----AKKLESE-KELQDK--INELNTEISS 53


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/47 (25%), Positives = 31/47 (65%)
 Frame = +3

Query: 183 SSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQD 323
           + IK+++++++ +++K  + ++++ +LEA  + LKDE      +I D
Sbjct: 634 AKIKDLEKQLEDAIEKRKHAEQESDELEADLQKLKDELASTKRHIAD 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,534,939
Number of Sequences: 59808
Number of extensions: 548834
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)