Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K23
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   6.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 503  SRTRSVWTSSPTN*KRPVSSPRTLTENPTRFRENWPSLKT 622
            S T S W ++ T  +   + P T +        NWP+  T
Sbjct: 1045 STTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGT 1084


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 527 SSPTN*KRPV-SSPRTLTENPTRFRENWPSLKTNS 628
           +SPT    P  SSPR+++E+P   R+  P+ + NS
Sbjct: 53  ASPTPGDVPTPSSPRSISEDPLNCRD-LPNSRCNS 86


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 RGSPRTPEEARPGGGRPDPEQE 284
           RG PRTP + +   G+  P+++
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 286 CSCSGSGLPPPGRASSGVRGLPRLPSQHG 200
           C   G   P PG  S  V G P + S HG
Sbjct: 131 CLSGGPKHPDPG--SLQVPGAPMMMSSHG 157


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 122 IFFLIASMVAAFC 84
           +FF +A++ AA+C
Sbjct: 8   LFFAVATLFAAYC 20


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 298 PAPVCSCSGSGLPPPGRASSGVRGLPRLP 212
           P P     G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLPLPQVP 181


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 298 PAPVCSCSGSGLPPPGRASSGVRGLPRLP 212
           P P     G  LPP G   +    LP++P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVP 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.128    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,571
Number of Sequences: 336
Number of extensions: 2513
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)