Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_K21
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.54
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 30 0.54
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.71
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 28 1.6
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 28 1.6
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.6
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 2.2
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 2.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 2.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 2.9
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 2.9
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 27 3.8
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 27 3.8
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 5.0
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 5.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 27 5.0
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 5.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 5.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 27 5.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 5.0
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 27 5.0
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 26 6.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 26 6.6
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 26 6.6
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 8.7
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 8.7
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 26 8.7
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 8.7
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 8.7
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 328 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 152
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 339 PGGAEP*AGTSGPPQRPGAQAQ 274
PGG P G SGPP RPGA Q
Sbjct: 204 PGGDAP-PGPSGPPGRPGAPGQ 224
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.71
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 315 GTSGPPQRPGAQAQRETLGVRS 250
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 345 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 241
T GGA P +GT+ PP P + L +R Q+
Sbjct: 263 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 345 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 241
T GGA P +GT+ PP P + L +R Q+
Sbjct: 563 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 311 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 147
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P+TPP G +G P PG Q G + S A A G A + +G
Sbjct: 144 PITPPPCKPCPQGPAGAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASG 195
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQAQRETL 262
P P G GA G +G P +PGA AQ E++
Sbjct: 187 PAGPKGASGAPGNPGQAGAPGQPGADAQSESI 218
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRP 289
P T PG A P G G PQRP
Sbjct: 291 PRTTPGSAGPGTGPPGTPQRP 311
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRP 289
P T PG A P G G PQRP
Sbjct: 289 PRTTPGSAGPGTGPPGTPQRP 309
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 299 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 195
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGA 283
P PP G+ P AG+ PP P A
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAA 261
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGA 283
P PP G+ P AG+ PP P A
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAA 282
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGA 283
P PP G+ P AG+ PP P A
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAA 267
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 344 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 207
PLR S Q H H R P HS + R E P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 342 PPGGAEP*AGTSGPPQRPG 286
PPG A P AG +GPP PG
Sbjct: 170 PPGPAGP-AGNAGPPGAPG 187
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 345 TPPGGAEP*AGTSGPPQRPGAQAQ 274
TP GGA G GPP PG Q
Sbjct: 195 TPSGGAAGPPGPPGPPGGPGNDGQ 218
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQA 277
P PPG GA AGT+G P PG A
Sbjct: 157 PAGPPGPPGAPGDAGTNGAPGAPGGDA 183
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLG 259
P+TPP G +GPP PGA T G
Sbjct: 144 PITPPPCKPCPDGPAGPPGPPGAPGDAGTNG 174
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 342 PPGGAEP*AGTSGPPQRPGAQAQ 274
PPG A P G GPP PGA +
Sbjct: 184 PPGEAGP-KGPPGPPGSPGAPGE 205
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 304 TTTEARRPGTARNTRRPKPTELSVCCRERSETP 206
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 307 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 182
R T A+RPG R R K +E V R + E KP +
Sbjct: 352 RLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRVEKPKK 393
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P+TPP G +G P PG Q G + S A A G A + G
Sbjct: 144 PITPPPCKPCPQGPAGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPG 195
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P+TPP G +G P PG Q G + S A A G A + G
Sbjct: 144 PITPPPCKPCPQGPAGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPG 195
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P+TPP G +G P PG Q G + S A A G A + G
Sbjct: 144 PITPPPCKPCPQGPAGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPG 195
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGS 220
P PPG GA G +G P RPG A + G R A AG+
Sbjct: 154 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGA 199
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P TPP G GPP PGA G R A GS R G
Sbjct: 141 PTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 192
>Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical
protein F32G8.5 protein.
Length = 294
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 233 NAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPGGVTG 352
NAQ+ TPS ++C P GPD G + P G+ G
Sbjct: 125 NAQIDTYATPSCTQCTPGPPGAPGPD----GVSGPVGING 160
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLG 259
PV PPG G GPP PG + Q+ LG
Sbjct: 274 PVGPPGML----GLDGPPGYPGLKGQKGDLG 300
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLG 259
PV PPG G GPP PG + Q+ LG
Sbjct: 274 PVGPPGML----GLDGPPGYPGLKGQKGDLG 300
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLG 259
PV PPG G GPP PG + Q+ LG
Sbjct: 274 PVGPPGML----GLDGPPGYPGLKGQKGDLG 300
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGS 220
P PPG GA G +G P RPG A + G R A AG+
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGA 194
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P TPP G GPP PGA G R A GS R G
Sbjct: 136 PTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 187
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 286 RPGTARNTRRPKPTEL 239
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPG 286
P PPGG P G PP PG
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG 749
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPG 286
P PPGG P G PP PG
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG 749
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGS 220
P PPG GA G +G P RPG A + G R A AG+
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGA 194
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTG 196
P TPP G GPP PGA G R A GS R G
Sbjct: 136 PTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 187
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPG 286
P PPGG P G PP PG
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPG 332
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 304 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 149
T+TE P + RP T+L+V ++TP H N+P P ++ SP F
Sbjct: 263 TSTETSSPFFLDQSVRP--TQLAVASSFPAQTPLH-NEPLPPPVTQNSPSIF 311
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQR 271
P P G + P AG +GP +PG QR
Sbjct: 167 PAGPAGSSGP-AGPAGPSGQPGTPGQR 192
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQR 271
P P G + P AG +GP +PG QR
Sbjct: 151 PAGPAGSSGP-AGPAGPSGQPGTPGQR 176
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 351 PVTPPG-----GAEP*AGTSGPPQRPGAQAQR 271
P PPG G++ GT+GPP PG + ++
Sbjct: 263 PKGPPGPAGQPGSDGNPGTAGPPGNPGGEGEK 294
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 351 PVTPPG--GAEP*AGTSGPPQRPGAQAQRE 268
P PPG G++ G SGP +PGA A E
Sbjct: 121 PPGPPGTDGSDGKDGLSGPDGQPGADADPE 150
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQ 244
P PPG P +G GPP PG + G +Q
Sbjct: 159 PTGPPGETGP-SGPEGPPGNPGRIGEHGREGYPGQQ 193
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 350 RSPLRAVQSREQGHQDHH-RGPAPRHSEKHSASEAD 246
+SP+ +V E+G++DHH P H A D
Sbjct: 531 QSPVLSVHGGEEGYEDHHDEAPVLSVHTDHKAHSED 566
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 311 HQDHHRGPAPRHSEKHSASEADRAE 237
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 335 AVQSREQGHQDHHRGPAPRHSEKHS 261
A Q++EQ HQ HH+ P+ + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -3
Query: 329 QSREQGHQDHHRGPAPRH-SEKHSASE 252
Q+ H HH PAPRH S H E
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 76 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 225
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 351 PVTPPGGAEP*AGTSGPPQRPGAQAQ 274
P+TP GA AG +GP +PGA Q
Sbjct: 212 PITP--GAPGPAGPAGPQGQPGAPGQ 235
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = -2
Query: 351 PVTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 259
P PPG EP G+ G P RPG R G
Sbjct: 190 PAGPPGENGRNGEPQPGSPGEPGRPGQPGSRGPAG 224
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 282
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 232 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 137
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 76 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 228
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = -2
Query: 351 PVTPPG----GAEP*AGTSGPPQRPGAQAQRETLG 259
P PPG EP G G P +PG QR G
Sbjct: 192 PAGPPGENGNNGEPQPGAPGEPGQPGQPGQRGPAG 226
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 311 HQDHHRGPAPRHSEKHSASEADRAE 237
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 112 IVVLTSSSWRDVIKP 68
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,797
Number of Sequences: 27780
Number of extensions: 176914
Number of successful extensions: 1077
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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