Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_K20
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 113 1e-25
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 78 8e-15
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 70 2e-12
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 67 1e-11
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359 29 2.7
02_04_0452 + 23044190-23045227 29 2.7
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 28 8.3
07_01_0218 - 1623373-1625418 28 8.3
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 113 bits (272), Expect = 1e-25
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +3
Query: 255 PKEEIKERGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVN 434
PK + R + +G LVDG++ DGL DVY F MGNCAE A +TR+DQD YA+
Sbjct: 129 PKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQDAYAIQ 188
Query: 435 SYKRSAAAYEAKAFVDELVPVPVPQKRG-APVIFAEDEEYKRVNFEKFTKLSTVFQKENG 611
S +R AA + AF E+VP+ VP RG PV+ +DE + + K KL F++ G
Sbjct: 189 SNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPSFKENGG 248
Query: 612 TVTAGNASTLNDG 650
TVTAGNAS+++DG
Sbjct: 249 TVTAGNASSISDG 261
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 77.8 bits (183), Expect = 8e-15
Identities = 39/98 (39%), Positives = 58/98 (59%)
Frame = +3
Query: 255 PKEEIKERGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVN 434
PK R + +G L+DG++ DGL DVYN F MG CAE A + I+R++QD YA+
Sbjct: 135 PKYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYAIQ 194
Query: 435 SYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEE 548
S +R+ AA ++ F E+ PV + RG P + + +E
Sbjct: 195 SNERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKDE 232
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Frame = +3
Query: 360 MGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP-- 524
MG +EN A + +TRQ+QD+ A S++R+AAA A F DE+VPVP V K G
Sbjct: 193 MGITSENVAHRYGVTRQEQDQAAAESHRRAAAATAAGKFKDEIVPVPTKIVDPKTGEEKK 252
Query: 525 -VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 650
VI +D KL VF+K+ GT TAGN+S ++DG
Sbjct: 253 VVISVDDGIRPGTTASGLAKLKPVFRKD-GTTTAGNSSQVSDG 294
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 66.9 bits (156), Expect = 1e-11
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Frame = +3
Query: 360 MGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP-- 524
MG +EN AK+ ITR +QD+ AV S++++AAA + F +E+VPV V K G
Sbjct: 195 MGLTSENVAKRFGITRMEQDQAAVESHRKAAAAAASGKFKEEIVPVHTKIVDPKTGEEKE 254
Query: 525 -VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 650
V+ A+D + +KL F K+ GT TAGNAS ++DG
Sbjct: 255 IVVSADDGIRPGTSLAVLSKLKPAFSKD-GTTTAGNASQVSDG 296
>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
Length = 514
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 231 AAIERAGIPKEEIKERGETSYGGMQLVDGIVFDGLTDVYN 350
A + +G+ + ++ G+ + G +L DGI+FD D YN
Sbjct: 412 ALLCESGVIEHQLGGDGDVADGLRRLCDGIIFDADDDAYN 451
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 325 NTIPSTNCIPPYEVSPLSFISSLGIPALSIAALTATAPNSDADKLDKLPRKEP 167
+T P T+ PP P + S+ PA + A +AP +D D L R+EP
Sbjct: 195 STRPPTSAPPP--PPPAAASSATTAPATTTGAAATSAPGADDDAWGFLLRREP 245
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 349 LYTSVSPSNTIPSTNCIPPYEVSPLSFISSLGIPALSIAALTATA 215
L+ S +++ ST+ PP ++ L+F+SS P+ SI A A
Sbjct: 36 LHRRSSGTSSSSSTSTSPPLSLASLTFLSSAASPSSSIFPRLAAA 80
>07_01_0218 - 1623373-1625418
Length = 681
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 229 LTATAPNSDADKLDKLPRKEP 167
+ AP D DKL KLPR EP
Sbjct: 274 INGPAPAIDIDKLPKLPRAEP 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,567
Number of Sequences: 37544
Number of extensions: 255763
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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