Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   2.1  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   2.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   4.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   8.5  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   8.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   8.5  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   8.5  

>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 529 LVLGDAGQAYRVCRGREKRLLPRHVAAPTRDSVPPPR 639
           L++G AGQ        E+R+  +    PT   +PPPR
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPR 570


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 326 WEIVVITDANSVFVNHWLTEHGLLQ 400
           W+++++    +  +NH++T H LL+
Sbjct: 24  WKVLIVDTKTADIINHFITIHSLLE 48


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 284 GSVSLTLCTTGCPLRLDRLSMRAQIHHSCTESSRGY 177
           GS  + + T    + +D+  +R  IHHS  +S  GY
Sbjct: 792 GSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 144 LNLLIIVASESSSTIVRSKSKKATEAILAKIT--STPANLQEITH 16
           L  + ++ S S+   +   +K A E+ILA  +  S P+N+QE+ H
Sbjct: 598 LRRMSVICSTSTERSLMLFTKGAPESILAISSQQSIPSNVQEVIH 642


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 401 YITNVITNRAFWRHSRLYIEPYMKQT 478
           Y+T  +   A WRH  +Y+ P+  Q+
Sbjct: 457 YLTLPLPTSAKWRHKVVYVPPFGTQS 482


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -1

Query: 214 KYITHVRSPVVVTAL--PVRR 158
           K+ TH  SP++ TAL  PVRR
Sbjct: 744 KWPTHTLSPIITTALKQPVRR 764


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 128 SWHQNHHQLLYDQNQRKQQKPF*QKSQ 48
           SW   HH+ LY+  + K +K F ++++
Sbjct: 662 SWIVKHHETLYELEKEKIKKKFDRENE 688


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 65  MASVAFFDFDRTIVDDDSDATIINKLREKKPPPDWESSNHDWTPYMSDVFEHA 223
           MA  + F  + +  D+ S ++I ++   K+P    ES+NH  +    DV E A
Sbjct: 1   MAKSSEFVNEESSEDESSVSSIEDQHSSKEPEQSVESNNHGESNAQEDVAEIA 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,926
Number of Sequences: 5004
Number of extensions: 68141
Number of successful extensions: 257
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)