Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K15
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   2.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   2.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 29  CKLRFQHVLQIVHPLCSVGGRGFRQPQPQA*ASAD 133
           C+ RF+    +VH  C       R P P   A+ D
Sbjct: 252 CRGRFRRRHHLVHHKCGGEEEAERAPAPAVRAAGD 286


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 59  FVEHVESATCRFSFKSSAG 3
           F+E   +  CRF F SS G
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 5   RPMT*RKTCKLRFQHVLQI 61
           +PM     C +RF+H+ +I
Sbjct: 343 QPMDGEDQCDVRFRHITEI 361


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 16  LKENLQVALSTCSTNCSPSLLCWWP 90
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 16  LKENLQVALSTCSTNCSPSLLCWWP 90
           + ENL++ L   S     S    WP
Sbjct: 211 INENLKMGLDIASITAQASSFVVWP 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,743
Number of Sequences: 336
Number of extensions: 662
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)