Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K14
         (763 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075202-1|AAL68070.1|  117|Drosophila melanogaster AT14009p pro...    58   1e-08
AF143200-1|AAD32690.1|  117|Drosophila melanogaster vacuolar pro...    58   1e-08
AE014297-2689|AAF55686.1|  117|Drosophila melanogaster CG6213-PA...    58   1e-08

>AY075202-1|AAL68070.1|  117|Drosophila melanogaster AT14009p
           protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 24/47 (51%), Positives = 37/47 (78%)
 Frame = +3

Query: 276 GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 416
           GVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 68  GVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114



 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +2

Query: 74  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 253
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 254 KHMGT 268
           KHMG+
Sbjct: 61  KHMGS 65


>AF143200-1|AAD32690.1|  117|Drosophila melanogaster vacuolar
           proton-motive ATPasesubunit G VHA13 protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 24/47 (51%), Positives = 37/47 (78%)
 Frame = +3

Query: 276 GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 416
           GVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 68  GVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114



 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +2

Query: 74  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 253
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 254 KHMGT 268
           KHMG+
Sbjct: 61  KHMGS 65


>AE014297-2689|AAF55686.1|  117|Drosophila melanogaster CG6213-PA
           protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 24/47 (51%), Positives = 37/47 (78%)
 Frame = +3

Query: 276 GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 416
           GVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 68  GVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114



 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +2

Query: 74  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 253
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 254 KHMGT 268
           KHMG+
Sbjct: 61  KHMGS 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,764,184
Number of Sequences: 53049
Number of extensions: 522446
Number of successful extensions: 1440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)