Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K12
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.021
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   1.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   4.1  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   5.4  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   7.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.5  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.5  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 203 LILTAATCWLFWLCAYMAQMNPLIGP 280
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 179
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 603 SNFDCSNNFLFSS*--IHKSSILEFVCD*KKKKQNTIENCRIIRYLIIPKNV*ILSLKNK 776
           S F+  ++FL  S   +   S+L+F+ D  +  QNTI     ++ LI   N     L+  
Sbjct: 299 SFFELISHFLIKSAQNLKGDSLLDFLFDYARSCQNTISYPIALQCLIYCSNPYFKRLELA 358

Query: 777 IKLYCXY 797
           +K+ C Y
Sbjct: 359 LKVSCAY 365


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 122 SILWGVVGIICPIFAPKGPNRGIIQV 199
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 75  NNISKWAT--PLSRSSFSPSFGVWLVLFAPSSHLKDQTEGL 191
           +N+ K A   PLS+ S SPS+  + V     S L+  ++GL
Sbjct: 41  DNVDKPANSIPLSKRSTSPSYAPYTVACPSGSLLRPASDGL 81


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 417 TIIVTFLNHPTKPLQGLLKSDD*ACVLLILF 325
           TI + +  HP +  QG++ +D  A ++L +F
Sbjct: 140 TIFIVYSPHPNETFQGIVLADHVARLVLCVF 170


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 710 FNCILFFFLSIANKFKDARFVNLRREKKIITA 615
           FN  + FFL+I    + +R +  +R++K ITA
Sbjct: 73  FNATVNFFLAIVGAVQVSRILVYQRQQKRITA 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,817
Number of Sequences: 5004
Number of extensions: 68228
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)