Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K12
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362...    29   4.3  
06_03_0830 + 25159758-25162460                                         29   5.7  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    29   5.7  
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53...    28   7.5  

>11_01_0467 +
           3621266-3621401,3621531-3622699,3622815-3623128,
           3623276-3623937,3624040-3624401
          Length = 880

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 576 KNWPQIQINDAS*SIQLYSS*NYRGKLKYGIIIYYNMF*GLNLKSI 439
           + +P++  N+ + + + +S  N  GK +YG +   N+F G N+ +I
Sbjct: 556 RKFPKVPYNELAEATEGFSESNLIGKGRYGYVYRGNLFQGTNVVAI 601


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 190 NPSVWSFRCEDGANNTNHTPKDGENEDRDKGVAHFEM 80
           NPSV S  C +G  N   T +   N D   G A   +
Sbjct: 235 NPSVPSLACRNGLENVPVTEESSANNDAKSGAAQVSL 271


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 493 IRHNNILQYVLGFKFKKHLHSLVTF---NNHCNILKP 392
           + H NI++Y+   K + HLH ++ +    +  NI+KP
Sbjct: 89  LNHKNIVKYLGSLKTRSHLHIILEYVENGSLANIIKP 125


>05_01_0080 -
           535443-535481,535569-535698,536483-536586,536686-536903,
           537755-537762,538146-538183,538475-538668,539168-539296,
           539392-539481,539726-539839,540008-540154,540228-540293,
           540876-540987
          Length = 462

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 137 VVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMN 265
           V+G+ C +     P  G I + L +T +T  ++W  AY+ +++
Sbjct: 385 VLGLACGLLWGAVPLVGAIWIALFVTISTGLVYWYYAYLLKID 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,655
Number of Sequences: 37544
Number of extensions: 382549
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)