Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K10
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    67   1e-11
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    60   1e-09
08_02_0588 + 19036509-19039235                                         25   1.1  
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782...    29   3.4  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    28   7.9  

>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = +1

Query: 145 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 321
           P VLWAQR E ++LT S+ + KD  +K E   + F      +      T+ L+D+VLPE 
Sbjct: 7   PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEG 65

Query: 322 SVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 453
           S    K     +I   +K    +W  L K ++K  Y+K+D+NKW
Sbjct: 66  SKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKW 109


>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
 Frame = +1

Query: 145 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPE 318
           P   WAQR + VFLT  + + +D  + ++ +  + F  +G  D+  +E+ + L+D V  E
Sbjct: 5   PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64

Query: 319 KSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPH-YLKIDFNKW 453
           +S      R +  +++K   +  +WP L K + KP  +LK+D++KW
Sbjct: 65  ESKAAVAARSICYLIKK--AESKWWPRLLKKEGKPPVFLKVDWDKW 108


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 1.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 501 ANAPELWWSWWSW 539
           AN   ++W+WW W
Sbjct: 10  ANLVRVFWAWWWW 22



 Score = 24.6 bits (51), Expect(2) = 1.1
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 519 WWSWWSWAE 545
           WW WW W +
Sbjct: 20  WWWWWWWGD 28


>01_06_0311 -
           28377414-28377623,28377758-28377856,28378116-28378253,
           28378697-28378827,28378920-28379066,28379164-28379293,
           28379625-28379654,28380138-28380416
          Length = 387

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 181 FLTFSVETKDPTIKIEKDSVYFRGEGAPDNRL 276
           FL     TKD T+K+ +D  +   EG PD+R+
Sbjct: 341 FLYEKASTKDKTLKLYEDGYHSILEGEPDDRI 372


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  WANLI*KFPTSLVYKLKKIKNSSSQIFCKAVRYLKY 119
           W+ LI  +    + KL+K K+     +C AV YL Y
Sbjct: 302 WSKLIFDWLMKHIRKLEKSKSLGGCFYCLAVNYLDY 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,895
Number of Sequences: 37544
Number of extensions: 347024
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)