Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K06
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 336 RASLLVEPRNPPTMLLAQ-LPMQSTPQSTPSTR 431
           R S  VE   P   +    +P+ STP+STP  R
Sbjct: 816 RCSSRVESLTPERKMEPPGVPLNSTPRSTPDKR 848


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 577 LSFFGGLLRSVYGSVDGIFCSVKDLLPISY 488
           LS  GGL+ S+Y +     C V   +P  Y
Sbjct: 210 LSRAGGLVNSLYQNATRKVCGVWKRIPHDY 239


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 437 KVPCRWRRLRSALHRQ 390
           K+P RW  L S  H++
Sbjct: 655 KLPVRWMALESLTHQR 670


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 352 WSREIRQRCC*LSCRCKALRN 414
           W R+ RQ  C +  R   LRN
Sbjct: 720 WERKRRQYLCPVLLRVSILRN 740


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,461
Number of Sequences: 336
Number of extensions: 2156
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)