Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K06
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   1.6  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.8  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.8  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 301 SRPRCRRPGQEGGRAYWWSREIRQRCC*LSCRCKALRNRR 420
           S PR +       RAYWW+ EI Q      CR   +  RR
Sbjct: 257 SLPRRKGGPYPRRRAYWWTTEIAQ------CRSHCIEARR 290


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 583  SAKGCRRRQREGAIXSRS-SQARS 651
            SAKG R R R G+  SRS S++RS
Sbjct: 1111 SAKGSRSRSRSGSGGSRSRSRSRS 1134


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 279  LPPRRHRKPPTL*KTRSRRR 338
            +PPR  R PP+   T  RRR
Sbjct: 1109 IPPRSRRLPPSPRTTEMRRR 1128


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,437
Number of Sequences: 2352
Number of extensions: 9889
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)