Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K06
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    38   0.008
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.41 
AC199158-7|ABO33284.1|  217|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC199158-3|ABO33287.1|  217|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +3

Query: 138 YSVILINVLCFFINKTQKCSAESQAHFVASARRLHLSSTGRRRMQSN 278
           YSV L N  CF I KT+K + ++  + + SA   + ++TG+ +++S+
Sbjct: 594 YSVTLDNTTCFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESH 640


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 300  KPPT-L*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQERLRTP 476
            KPP+ L KT S + AS + E  +   +  A +   STP+    TR     + +Q+  +TP
Sbjct: 2897 KPPSALSKTESLKEASNIQESASTTRVQPALVVSHSTPEPVQLTRMAAAKKSEQKEYKTP 2956

Query: 477  PTKP 488
              KP
Sbjct: 2957 VAKP 2960


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +3

Query: 186 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 353
           +K  +ES    +A +     S++  R  +S LP R     +  PPT  +   R   S   
Sbjct: 66  RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125

Query: 354 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQERLRTPPTK 485
           E      + + ++ ++STP STP+ ++  + R + ++  TPP +
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRR 165


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +3

Query: 186 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 353
           +K  +ES    +A +     S++  R  +S LP R     +  PPT  +   R   S   
Sbjct: 66  RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125

Query: 354 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQERLRTPPTK 485
           E      + + ++ ++STP STP+ ++  + R + ++  TPP +
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRR 165


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +3

Query: 186 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRR----HRKPPTL*KTRSRRRASLLV 353
           +K  +ES    +A +     S++  R  +S LP R     +  PPT  +   R   S   
Sbjct: 66  RKHPSESGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAE 125

Query: 354 EPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQERLRTPPTK 485
           E      + + ++ ++STP STP+ ++  + R + ++  TPP +
Sbjct: 126 EVE----VKIEEISVRSTPASTPAPKSTSKARGRPKKNPTPPRR 165


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 249 STGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPS 425
           S  RRR  S  P RR R PP    +RSR       +  R+PP    A+     +   +P 
Sbjct: 116 SPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPP---AKRRRDQSRSKSPP 172

Query: 426 TRNFRRCRLQQERLRTPPTK 485
            RN+R    Q++R  +PP +
Sbjct: 173 RRNYR----QRQRSGSPPVR 188


>AC199158-7|ABO33284.1|  217|Caenorhabditis elegans Hypothetical
           protein AC8.11 protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 246 SSTGRRRMQSNLPPRRH-RKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQST 419
           SS   +++Q N P + H R+P     TRS++R S    P  P   ++ Q  ++++P ST
Sbjct: 112 SSLSYKKVQ-NKPEQSHGRRPKRKINTRSQKRFSPSPSPVRPRKSMILQPLLKNSPVST 169


>AC199158-3|ABO33287.1|  217|Caenorhabditis elegans Hypothetical
           protein AC8.4 protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 246 SSTGRRRMQSNLPPRRH-RKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQST 419
           SS   +++Q N P + H R+P     TRS++R S    P  P   ++ Q  ++++P ST
Sbjct: 112 SSLSYKKVQ-NKPEQSHGRRPKRKINTRSQKRFSPSPSPVRPRKSMILQPLLKNSPVST 169


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 246 SSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTP 422
           S + RRR      PRR + P      R RR  S     R+PP     + P Q + Q  P
Sbjct: 475 SRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPP--PRRPRQDSEQQAP 531



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +3

Query: 258 RRRMQSNLP--PRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTR 431
           RRR  S  P  PRR R P        RRR S    PR            + +PQ   S R
Sbjct: 453 RRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRR-----------RQSPQRRRSPR 501

Query: 432 NFRRCRLQQERLRTPPTKP 488
             RR      R R+PP  P
Sbjct: 502 R-RRSPSSSSRSRSPPPPP 519


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 PRRHRKPPTL*KTRSRRRASLLVEPRN 365
           P R RKP TL +T+S++R S    P N
Sbjct: 206 PSRKRKPETLIETKSKKRKSARGRPSN 232


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 512 QGPSSHQLRLCWRRPQPLLLQATPS 438
           Q    H    CWR   PLL +A PS
Sbjct: 391 QAEVKHSYPFCWRSDTPLLYKAVPS 415


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 360 RNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQERLRTPPTKP 488
           R  PT+  A L  + TP  TP T +FR     Q     PP  P
Sbjct: 333 RTLPTLPKAVLA-KPTPMQTPMTPSFRGTNAAQSPANAPPRPP 374


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/77 (22%), Positives = 30/77 (38%)
 Frame = +3

Query: 84   VRSRYC*SIEKFKRAGENYSVILINVLCFFINKTQKCSAESQAHFVASARRLHLSSTGRR 263
            +RS  C  +     + E Y+  L N       KT +CS +  +       +++    G  
Sbjct: 791  IRSEVCDDVNVDSLSVEQYNEYLRNCEKKPRRKTPECSIKDTSKLSDEEYKIYKKKCGST 850

Query: 264  RMQSNLPPRRHRKPPTL 314
                N PP   R+ P++
Sbjct: 851  SEDGNAPPNGDRQKPSV 867


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 282 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTP 410
           PP+R    P +   + R  AS + + + PP  +  Q+P+ S P
Sbjct: 101 PPQRVHSIPPVYHRQKRSYASSVQQQKPPPVPIKQQVPVPSVP 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,025
Number of Sequences: 27780
Number of extensions: 228396
Number of successful extensions: 709
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)