Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K06
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 247 LRQEEEGCRATCRREGTGSRPRCRRPGQEGGRAYWWSR 360
           L Q +   +   RRE + S       G+EGG    WSR
Sbjct: 355 LGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSR 392



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 442 LRKFLVDGVDCGV 404
           L K+L+DG D GV
Sbjct: 9   LTKYLLDGYDAGV 21


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 352 WSREIRQRCC*LSCRCKALRNRRHRQGTF 438
           WSR+ R+    + C C   R RR  Q  F
Sbjct: 393 WSRDFRRAFVRILCACCPGRVRRRYQPAF 421


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 515 CQGPSSHQLRLCWRRPQPLLLQATPSKVPCRWRRLRSALHRQL 387
           CQ       ++ WR+P+P +++    K   R+    +AL  +L
Sbjct: 25  CQPTQRTMSKIQWRKPKPAMVE---EKTQLRYLEELNALRTEL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,658
Number of Sequences: 438
Number of extensions: 2446
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)