Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K05
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.6  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   8.8  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.8  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 274 AAPISKPGTTAKTTHSKP 221
           A P +KPG TA TT S+P
Sbjct: 397 ADPSAKPGATASTTPSEP 414


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 207 QKQPFGLLCVVFAVV 251
           ++ PFG+LC++F V+
Sbjct: 609 ERYPFGILCIIFTVL 623


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 433 LINIMGYYFFGTVQEEKRNLI 371
           +I+IMG YFFG +++   +L+
Sbjct: 168 IIDIMGTYFFGILRDHPSDLL 188


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 203 TTKTTFWFAVCCFCCRTGLTNRSCY 277
           T K   +FA+   C +  L N +CY
Sbjct: 16  TLKNLIFFAISTLCYKRALFNENCY 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,802
Number of Sequences: 5004
Number of extensions: 50966
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)