Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K03
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    42   7e-05
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.73 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   1.3  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   3.0  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +1

Query: 394 DPTVYQYDEIYDXXXXXXXXXXXXXXXXXX-----YIENLIKTANKRKLENERRVERQIQ 558
           D ++Y +DE YD                       Y+ENLI++A KRK +     ER + 
Sbjct: 63  DASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKRDLLLARERALL 122

Query: 559 KEREKEGDEFKDKEVFVTSAY 621
           K+ E EGD+  +K  FVTS+Y
Sbjct: 123 KKNELEGDDATEK--FVTSSY 141


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 331 LRPSDNINRQAKISQEKALLEDPTV 405
           L PS+N N QA I  +K   +DPT+
Sbjct: 312 LHPSENSNSQATIPSKKRNFDDPTI 336


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 526 ENERRVERQIQKEREKEGDEFKDKEV 603
           EN+R+ ER+++K REKE    K K++
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQL 604



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +1

Query: 514 KRKLENERRVERQIQKEREKE 576
           +++LE ++R E+Q QKEREK+
Sbjct: 654 QQELERQKREEKQKQKEREKK 674


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 514 KRKLENERRVERQIQKEREKEGDEFKD 594
           KRKLE E+      +++ EKEG + KD
Sbjct: 171 KRKLETEKLEANNKEEKEEKEGKDDKD 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,494
Number of Sequences: 5004
Number of extensions: 39093
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)