Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K03
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  LIKNPAIVYKTNIFLFPIPNSN 75
           +IKNPA+   TN +LF +  S+
Sbjct: 65  IIKNPAMQTATNYYLFSLAISD 86


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 514 KRKLENERRVERQIQKEREKEGDEFKDKEVF 606
           K+KL  ER   ++  + RE+E   +K++  +
Sbjct: 259 KKKLLEERTSRKRYSRSREREQKSYKNENSY 289


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 254 SVLSCLPPFSGTIKPYFFDAISALSIFGIHS 162
           S++  LP   G    +FFD +  L  F  HS
Sbjct: 230 SLMVILPDLVGKKITHFFDLVRPLIAFKFHS 260


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 191 KWHQKNMV*LYLRRGVSSSTHLNSK 265
           +WH K  V +    GV SS ++ SK
Sbjct: 71  QWHDKIFVTMLRYNGVPSSLNVISK 95


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 149  IIYYYYEFQRLTEQKWHQ 202
            +IY+  E ++  +Q+W+Q
Sbjct: 1491 MIYFVVEHKKKNQQEWNQ 1508


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 191 KWHQKNMV*LYLRRGVSSSTHLNSK 265
           +WH K  V +    GV SS ++ SK
Sbjct: 71  QWHDKIFVTMLRYNGVPSSLNVISK 95


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 191 KWHQKNMV*LYLRRGVSSSTHLNSK 265
           +WH K  V +    GV SS ++ SK
Sbjct: 71  QWHDKIFVTMLRYNGVPSSLNVISK 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,787
Number of Sequences: 438
Number of extensions: 2671
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)