Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_K02
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   6.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   7.9  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 466 LRGNEYEISFNMYSELTFTQLHSSAFKFSEGFYKCINLTECTL 594
           +RGN+Y +    Y +         A++ S  F KC +L E  L
Sbjct: 177 VRGNDYNLGKLKYDKNAKKLRFEIAYQGSSSFIKCFDLNEVEL 219


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 111 SPIYRRSTEVSPYCIKVPHVSLLKTRNSDL 22
           +P+   S E +   IKV H + L  RNSD+
Sbjct: 53  APVTDMSVEETRKAIKVAHEAFLSYRNSDI 82


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 15  IVEGPNFEFSTETHEELLYNKEKLLSNG 98
           I E  NF  ST+     + N +KL SNG
Sbjct: 646 IAEFKNFRLSTDISHSNVRNSKKLCSNG 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,159
Number of Sequences: 5004
Number of extensions: 47529
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)