Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J24
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    47   2e-06
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    28   1.5  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   2.0  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   3.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.1  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.1  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   8.0  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVN 356
           VS+PGK IL GEH+VVYG TA+A ++ LRS   ++  N
Sbjct: 7   VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTN 44


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 448 ILNWHQGITGKFSWR-LPHKIDHDYHLRRVEEYLHLIK 558
           ++NWH  +    SWR +  K D   +L  V  Y HLI+
Sbjct: 453 LMNWHYKLPDTISWRTIDLKKDRIPNLCAVSLYYHLIR 490


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 541 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 633
           +LH +  NF   P   Q+N + SFLY FS  +
Sbjct: 89  FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 415 FHWSRQSKVCSILNWHQGIT--GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 582
           FHW+     C+ L     +   GKF + L   +D+ +    +E    +  PNFDS  N
Sbjct: 37  FHWA-----CTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 432 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 334
           L  P+     DPR   +  L    EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 397  WIYRRPFHWSRQSKVCSI-LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFD 570
            W  RR      Q  + +I ++W  G  G F+   PHKID     +   ++ ++I  NF+
Sbjct: 1455 WKERRHLDQCLQQLLENIEISWLGGFKGIFN---PHKIDTSLFAKFSSQFQNIIAKNFN 1510


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 496 PHKIDHDYHLRRVEEYLH 549
           P  IDHD H++R+ E L+
Sbjct: 22  PDPIDHDLHVQRLRELLY 39


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 493  LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 597
            L  K+ + +      ++  L++P+   LPN  KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 514 DYHLRRVEEYLHLIKPNFDSLPNNQKNSLRSFLYVFSG 627
           DY       +LHL    F+SLPN  +   R F+    G
Sbjct: 733 DYIALNHNVHLHLANMIFESLPNASEGKERKFMISLLG 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,609
Number of Sequences: 5004
Number of extensions: 71859
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)