Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_J24
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209722-1|BAD92959.1| 421|Homo sapiens mevalonate kinase varia... 55 2e-07
M88468-1|AAB59362.1| 396|Homo sapiens mevalonate kinase protein. 54 4e-07
BC016140-1|AAH16140.1| 396|Homo sapiens MVK protein protein. 54 4e-07
AF217536-1|AAF82406.1| 113|Homo sapiens truncated mevalonate ki... 54 4e-07
AF217535-1|AAF82407.1| 396|Homo sapiens mevalonate kinase protein. 54 4e-07
AF060511-1|AAG43129.1| 86|Homo sapiens My016 protein protein. 36 0.14
Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein. 31 5.3
AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium ch... 30 9.3
AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium ch... 30 9.3
AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium ch... 30 9.3
>AB209722-1|BAD92959.1| 421|Homo sapiens mevalonate kinase variant
protein.
Length = 421
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 407
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V ++LP + ++
Sbjct: 33 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLNLPNIGIK 84
>M88468-1|AAB59362.1| 396|Homo sapiens mevalonate kinase protein.
Length = 396
Score = 54.4 bits (125), Expect = 4e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 407
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>BC016140-1|AAH16140.1| 396|Homo sapiens MVK protein protein.
Length = 396
Score = 54.4 bits (125), Expect = 4e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 407
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>AF217536-1|AAF82406.1| 113|Homo sapiens truncated mevalonate
kinase protein.
Length = 113
Score = 54.4 bits (125), Expect = 4e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 407
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 4 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 55
>AF217535-1|AAF82407.1| 396|Homo sapiens mevalonate kinase protein.
Length = 396
Score = 54.4 bits (125), Expect = 4e-07
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 407
VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++ PH V + LP + ++
Sbjct: 8 VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 59
>AF060511-1|AAG43129.1| 86|Homo sapiens My016 protein protein.
Length = 86
Score = 35.9 bits (79), Expect = 0.14
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +2
Query: 20 LQEELKTIHAFTQKTLTVDQW 82
L EEL IHAF QKTLT DQW
Sbjct: 60 LAEELPHIHAFEQKTLTPDQW 80
>Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein.
Length = 279
Score = 30.7 bits (66), Expect = 5.3
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +2
Query: 317 PRPKELHSDKGSKHSTRTSSPHTFAVRGSTGDHSIGADSQKSVPS*TGTRX*PANSLGDY 496
PRP S S ++ TS+P T ST + GA + S T T P
Sbjct: 56 PRPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPSPVPTTSTTSAPTTRTTSA 115
Query: 497 PTKSTMTIT 523
P ST + T
Sbjct: 116 PISSTTSAT 124
>AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium channel
protein.
Length = 1791
Score = 29.9 bits (64), Expect = 9.3
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -1
Query: 541 IPPPFASDSHGRFCGVISKRICRLXPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 362
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 361 GVFTSFITMELL 326
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
>AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium channel
type XI alpha subunit protein.
Length = 1791
Score = 29.9 bits (64), Expect = 9.3
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -1
Query: 541 IPPPFASDSHGRFCGVISKRICRLXPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 362
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 361 GVFTSFITMELL 326
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
>AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium channel
alpha subunit SCN12A protein.
Length = 1791
Score = 29.9 bits (64), Expect = 9.3
Identities = 18/72 (25%), Positives = 26/72 (36%)
Frame = -1
Query: 541 IPPPFASDSHGRFCGVISKRICRLXPGASLGWNRLLTVGSNGMVSCRSTHGKCMWTAGSC 362
+ P D F S +C S GW+ LL+ SC S+ C +
Sbjct: 1522 VNPESGIDDIFNFKTFASSMLCLFQISTSAGWDSLLSPMLRSKESCNSSSENCHLPGIAT 1581
Query: 361 GVFTSFITMELL 326
F S+I + L
Sbjct: 1582 SYFVSYIIISFL 1593
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,397,621
Number of Sequences: 237096
Number of extensions: 2710158
Number of successful extensions: 5755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5755
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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