Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J24
         (709 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060627-1|AAL28175.1|  390|Drosophila melanogaster GH04687p pro...    44   2e-04
AE013599-1544|AAF58481.1|  390|Drosophila melanogaster CG33671-P...    44   2e-04
AE013599-1545|AAM68636.1|   86|Drosophila melanogaster CG33672-P...    33   0.29 
AE014134-771|AAF50982.2|  446|Drosophila melanogaster CG3294-PA,...    33   0.50 
BT010306-1|AAQ23624.1| 1062|Drosophila melanogaster GH01369p pro...    31   1.5  
AE014298-2774|AAF48889.2| 1038|Drosophila melanogaster CG7058-PA...    31   1.5  
AY118319-1|AAM48348.1|  781|Drosophila melanogaster HL08052p pro...    30   3.5  
AF162681-1|AAD50777.1|  737|Drosophila melanogaster maroon-like ...    30   3.5  
AE014298-3026|AAF50901.1|  781|Drosophila melanogaster CG1692-PA...    30   3.5  
BT011430-1|AAR99088.1|  804|Drosophila melanogaster RH70434p pro...    29   4.7  
AE014298-1451|AAF46586.2|  804|Drosophila melanogaster CG32683-P...    29   4.7  
X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase...    29   8.2  
AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p pro...    29   8.2  
AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA...    29   8.2  

>AY060627-1|AAL28175.1|  390|Drosophila melanogaster GH04687p
           protein.
          Length = 390

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 29/37 (78%)
 Frame = +3

Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEV 353
           V +PGKVILHGEH+VVY + A+A  +GL +++  +++
Sbjct: 6   VHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQL 42


>AE013599-1544|AAF58481.1|  390|Drosophila melanogaster CG33671-PA,
           isoform A protein.
          Length = 390

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 29/37 (78%)
 Frame = +3

Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEV 353
           V +PGKVILHGEH+VVY + A+A  +GL +++  +++
Sbjct: 6   VHSPGKVILHGEHAVVYHRPALAAVVGLGTTLRFRQL 42


>AE013599-1545|AAM68636.1|   86|Drosophila melanogaster CG33672-PA,
           isoform A protein.
          Length = 86

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 20  LQEELKTIHAFTQKTLTVDQWK 85
           L EELK IHAF+QK+ T ++W+
Sbjct: 60  LAEELKEIHAFSQKSYTPEEWE 81


>AE014134-771|AAF50982.2|  446|Drosophila melanogaster CG3294-PA,
           isoform A protein.
          Length = 446

 Score = 32.7 bits (71), Expect = 0.50
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +2

Query: 293 RKNCDRCQPRPKELHSDKGSKHSTRTSSPHTFAVRGSTGDH 415
           R   DR   R K  HS  GS H  R S  H      +T DH
Sbjct: 400 RSRSDRSSVRSKREHSSSGSSHDDRRSKRHHHHHNSTTPDH 440


>BT010306-1|AAQ23624.1| 1062|Drosophila melanogaster GH01369p
           protein.
          Length = 1062

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 454 NWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNSLR 603
           N +QG++ K S  L  K  +DY+  ++    HL +P   +  N  KN+LR
Sbjct: 778 NLNQGLSEKDSMYLDRKQYYDYNSIKLNLIRHLCEPPIAASSNLSKNALR 827


>AE014298-2774|AAF48889.2| 1038|Drosophila melanogaster CG7058-PA
           protein.
          Length = 1038

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 454 NWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNSLR 603
           N +QG++ K S  L  K  +DY+  ++    HL +P   +  N  KN+LR
Sbjct: 754 NLNQGLSEKDSMYLDRKQYYDYNSIKLNLIRHLCEPPIAASSNLSKNALR 803


>AY118319-1|AAM48348.1|  781|Drosophila melanogaster HL08052p
           protein.
          Length = 781

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 337 MELLRPRLTAIAVFPYTTECSPCKMTFPGAETLT 236
           ++LLRP+L  +A++P    C+  K+  PG+  LT
Sbjct: 506 VQLLRPKLLQMAIYP-VKSCAAFKIELPGSWPLT 538


>AF162681-1|AAD50777.1|  737|Drosophila melanogaster maroon-like
           protein protein.
          Length = 737

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 337 MELLRPRLTAIAVFPYTTECSPCKMTFPGAETLT 236
           ++LLRP+L  +A++P    C+  K+  PG+  LT
Sbjct: 506 VQLLRPKLLQMAIYP-VKSCAAFKIELPGSWPLT 538


>AE014298-3026|AAF50901.1|  781|Drosophila melanogaster CG1692-PA
           protein.
          Length = 781

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 337 MELLRPRLTAIAVFPYTTECSPCKMTFPGAETLT 236
           ++LLRP+L  +A++P    C+  K+  PG+  LT
Sbjct: 506 VQLLRPKLLQMAIYP-VKSCAAFKIELPGSWPLT 538


>BT011430-1|AAR99088.1|  804|Drosophila melanogaster RH70434p
           protein.
          Length = 804

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 281 FGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPHTFA-VRGSTGDHSIG 424
           FGR +   ++C   P   +S    +H      PHT A V G  G  S+G
Sbjct: 356 FGRSKSEIEKCPNDPFHSYSKSFQEHCDSMLPPHTGAGVTGGIGGVSVG 404


>AE014298-1451|AAF46586.2|  804|Drosophila melanogaster CG32683-PA
           protein.
          Length = 804

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 281 FGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPHTFA-VRGSTGDHSIG 424
           FGR +   ++C   P   +S    +H      PHT A V G  G  S+G
Sbjct: 356 FGRSKSEIEKCPNDPFHSYSKSFQEHCDSMLPPHTGAGVTGGIGGVSVG 404


>X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase
           III second-largestsubunit protein.
          Length = 1135

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -1

Query: 454 LGWNRLLTVGSNGMVSCR---STHGK 386
           L WN++LT   NG+V C+   STH K
Sbjct: 191 LSWNKMLTEDFNGVVQCQVTSSTHEK 216


>AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p
           protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -1

Query: 454 LGWNRLLTVGSNGMVSCR---STHGK 386
           L WN++LT   NG+V C+   STH K
Sbjct: 201 LSWNKMLTEDFNGVVQCQVTSSTHEK 226


>AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA
           protein.
          Length = 1137

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -1

Query: 454 LGWNRLLTVGSNGMVSCR---STHGK 386
           L WN++LT   NG+V C+   STH K
Sbjct: 192 LSWNKMLTEDFNGVVQCQVTSSTHEK 217


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,822,470
Number of Sequences: 53049
Number of extensions: 798883
Number of successful extensions: 2419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)