Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_J24
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical ... 55 6e-08
AF078787-4|AAC26952.2| 274|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 27 9.9
Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical p... 27 9.9
Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical p... 27 9.9
Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical p... 27 9.9
Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical p... 27 9.9
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 27 9.9
Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 27 9.9
AF083232-1|AAD03690.1| 392|Caenorhabditis elegans nuclear recep... 27 9.9
AF016438-10|AAK84533.2| 394|Caenorhabditis elegans Nuclear horm... 27 9.9
>AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical
protein Y42G9A.4c protein.
Length = 484
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 422
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 14 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 70
Query: 423 EPTVKS 440
+ +K+
Sbjct: 71 KDLLKA 76
>AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical
protein Y42G9A.4b protein.
Length = 614
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 422
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 144 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 200
Query: 423 EPTVKS 440
+ +K+
Sbjct: 201 KDLLKA 206
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 422
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 44 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100
Query: 423 EPTVKS 440
+ +K+
Sbjct: 101 KDLLKA 106
>AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical
protein Y42G9A.4d protein.
Length = 514
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +3
Query: 243 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 422
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 44 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100
Query: 423 EPTVKS 440
+ +K+
Sbjct: 101 KDLLKA 106
>AF078787-4|AAC26952.2| 274|Caenorhabditis elegans Hypothetical
protein T17A3.6 protein.
Length = 274
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 391 RAWIYRRPFHWSRQSKVCSI----LNWHQGITGKFSWRLPHKIDHDYHLRRVEEYLHLIK 558
+ + ++ P R VCSI L +H+ I K+S R +K+ DYH + +E+ ++
Sbjct: 85 KVFYWKPPGFTFRTVHVCSIFMEDLKFHRDILMKYS-RQFNKLTLDYHSLKSQEFHSILS 143
Query: 559 PNFDSLPNNQKNSLRSFL 612
N+D + L L
Sbjct: 144 LNYDRFCLEKATKLEDLL 161
>Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical
protein F36H2.5 protein.
Length = 392
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +2
Query: 308 RCQPRPKELHSDKGSKHSTRTSSPHTFAVRGSTGDHSIGADSQKSVPS*TGTRX*PANS- 484
RC + D + + SP + A+ T IGA +P+ +N
Sbjct: 45 RCDTNYAATNGDTSAICTNGVWSPKSLAMCQRTLKEVIGASCPAGIPAVLAATMTYSNGQ 104
Query: 485 -LGDYPTKSTMTITCE 529
LG YP + +T TC+
Sbjct: 105 LLGPYPAATVVTATCQ 120
>Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 581 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 615
>Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 591 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 625
>Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 595 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 629
>Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 653 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 687
>Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 611 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 645
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 619 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 653
>Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 581 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 615
>Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 591 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 625
>Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 595 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 629
>Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 653 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 687
>Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 611 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 645
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 619 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 653
>AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like
potassium channel protein.
Length = 791
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 278 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPH 382
A R ++ RC P + GS+ S+R S PH
Sbjct: 581 AVRRSAESVSRCDSNPIDRRQSAGSRSSSRCSPPH 615
>AF083232-1|AAD03690.1| 392|Caenorhabditis elegans nuclear receptor
NHR-18 protein.
Length = 392
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 361 HTNQQSTYICRAWIYRRPFHWSRQSKVCSILNWHQGITGKFS 486
H S C A+ +RR W+ + ++C H + GKF+
Sbjct: 20 HFGVMSCRACAAF-FRRAATWNLEKRICPNGTCHTSVNGKFN 60
>AF016438-10|AAK84533.2| 394|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 18 protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 361 HTNQQSTYICRAWIYRRPFHWSRQSKVCSILNWHQGITGKFS 486
H S C A+ +RR W+ + ++C H + GKF+
Sbjct: 22 HFGVMSCRACAAF-FRRAATWNLEKRICPNGTCHTSVNGKFN 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,960
Number of Sequences: 27780
Number of extensions: 412810
Number of successful extensions: 1203
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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