Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_J23
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 83 4e-17
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 55 7e-09
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 29 0.51
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 3.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.8
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 25 6.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 6.3
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 25 8.3
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 82.6 bits (195), Expect = 4e-17
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Frame = +1
Query: 40 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 219
Y+A+ F Q YY FD + R+ L ++Y E S ++FEG QLQG I+EKL SL FQ+
Sbjct: 4 YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60
Query: 220 ITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 393
+ ++ +D+QP G V++ V G L DE+ Y Q F L ++YV +D+FRL
Sbjct: 61 VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 55.2 bits (127), Expect = 7e-09
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +1
Query: 43 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLT 210
D IG FVQ+YYT + R + Y +++ + E + L G +I K+ L
Sbjct: 16 DEIGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLD 73
Query: 211 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 390
FQ +++ VDS +GG++I VLG + + QTF L + ++V +DIFR
Sbjct: 74 FQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133
Query: 391 LGIHDI 408
D+
Sbjct: 134 FLREDV 139
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.1 bits (62), Expect = 0.51
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 485 RILDIWYTLYFSCIISSKNL 544
+ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 401 WMPKRKMSC*T*NESPSGFNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 222
W + K C + SP G N+ + +YR + F++P I GW TI+
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436
Query: 221 I 219
I
Sbjct: 437 I 437
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 347 FNTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 240
F+ C+Y S F+ R L+ PPS I +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 58 GFVQQYYTLFDDPAQRANLVNMYNVETSFMTFE-GVQLQGAVKIMEKLNSLTFQ 216
GF+Q+ YT+FD + + N ++E + T+ G+ + GA + NS ++
Sbjct: 219 GFIQEDYTVFDGSSIKD---NCSSIEITQWTYNIGLYMAGAAYMYNYTNSTVWK 269
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 394 LNGKCRAEHKMNLRVASTRRF 332
L KCR EH + L +A +++F
Sbjct: 1109 LQSKCRREHSLRLDLAFSKKF 1129
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 519 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 421
E + +M +L +LY ISN LSI+ + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 420 KDRHNTKKCLT*NLI 464
KD HNTKKCL LI
Sbjct: 259 KDDHNTKKCLAQLLI 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,358
Number of Sequences: 5004
Number of extensions: 51217
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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