Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_J23
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 87 1e-17
01_06_0963 + 33441731-33442096,33442175-33442270 62 3e-10
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 48 4e-06
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 48 6e-06
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 38 0.008
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 31 0.52
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961... 29 3.7
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 27 8.5
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 27 8.5
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +1
Query: 43 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 222
DA+ K FV+ YY FD R LV++Y + S +TFEG Q GA I KL SL F +
Sbjct: 4 DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
Query: 223 TRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 393
+ VD QP GG+L+ V G L+ D P + Q F L P G +FYVQ+D+FRL
Sbjct: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +1
Query: 37 QYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQ 216
Q D + + FV+ YY FD RA L +Y +TS ++FEG + GA +I KL L F+
Sbjct: 24 QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFE 80
Query: 217 KITRIVTAVDSQ--PMFDGGVLINVLGRLKCDEDPPHLYMQTF 339
+ V VD Q P F GG+L+ V G L+ + L F
Sbjct: 81 QCRHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Frame = +1
Query: 34 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQLQGAVKIMEKLNS 204
P +G FV QYY + Q +LV+ + + S + V ME +N+
Sbjct: 18 PSAQVVGNAFVHQYYNILH---QSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINA 74
Query: 205 -LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQH 378
+ I R + AVD+Q GGV + V G L +D + Q+F L P ++V +
Sbjct: 75 KIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLN 134
Query: 379 DIFR 390
DI R
Sbjct: 135 DILR 138
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 48.0 bits (109), Expect = 6e-06
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Frame = +1
Query: 31 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG---AVKIMEKLN 201
+P +G FVQQYY + Q +LV + + S + G +V ME +N
Sbjct: 9 SPSAQVVGNAFVQQYYQILH---QSPDLVYRFYQDASRLGRPPADRYGDMVSVTTMEAIN 65
Query: 202 S-LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 375
+ ++R + VDSQ GGV + V G L + + Q+F L P ++V
Sbjct: 66 EKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVL 125
Query: 376 HDIFR 390
+D+FR
Sbjct: 126 NDMFR 130
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 37.5 bits (83), Expect = 0.008
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Frame = +1
Query: 28 LNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLN- 201
L+PQ IG FVQQYY L P Q + Y+ ++ + +V + +N
Sbjct: 12 LSPQM--IGNAFVQQYYNVLHSSPGQ---VCKFYHDSSTLGRPDSNGTMTSVTTLTAIND 66
Query: 202 ---SLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFY 369
S F + VD+Q +GGV I V G + + H + Q+F L P ++
Sbjct: 67 EFLSTDFSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYF 126
Query: 370 VQHDIFR 390
V +D+ R
Sbjct: 127 VLNDMLR 133
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 31.5 bits (68), Expect = 0.52
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Frame = +1
Query: 28 LNPQYDAIGKGFVQQYY-TLFDDPAQRANLVNMYNVETSFMTFEGVQ--LQGAVKIMEKL 198
++PQ I FVQQYY L + P Q ++ GV + I + +
Sbjct: 12 ISPQ--VISGAFVQQYYHILHETPDQVYKFYQDASI-VGRPDSNGVMKYVSTTADINKII 68
Query: 199 NSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQ 375
S+ F + D+Q GVLI V G L E + Q+F L P Y V
Sbjct: 69 LSMDFSNYLTEIETADAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVL 127
Query: 376 HDIFR 390
+DIFR
Sbjct: 128 NDIFR 132
>03_02_0581 -
9617039-9617936,9618057-9618502,9618985-9619071,
9619276-9619416,9620220-9620411,9620491-9620652,
9621116-9621199,9621329-9621706
Length = 795
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 412 KLCHGCLNGKCRAEHKMNLRVASTRRFA-CTDVEDLRHTS 296
+LCHGC G R E + +R+AS R A C D + R S
Sbjct: 102 ELCHGCAVGLMRDEDE-GVRLASVRLIALCADKLNTREGS 140
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 309 RSSTSVHANLRVE-ATRRFILCSARHFPFRHP*HSLDHKDRHNTKKC 446
+ S+S+ A+ +V+ ATR F+ S R P H KD + K C
Sbjct: 305 KPSSSIDASSKVQQATREFLSLSLRELPDEHSRLGRPRKDCNLLKDC 351
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 344 NTKVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTIL 225
N KVC G +S+ F+L +L+ T PS+ E T V ++
Sbjct: 763 NVKVCTASSGPNSTTFDLSCSLLSTEPSS---EETTVRLV 799
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,366
Number of Sequences: 37544
Number of extensions: 304725
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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