Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J22
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...   258   6e-70
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.2  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score =  258 bits (632), Expect = 6e-70
 Identities = 123/191 (64%), Positives = 149/191 (78%)
 Frame = +2

Query: 146 ENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALH 325
           +++GI  + LY P+QYV+Q  LE  D VSTGKYTIGLG +KM F  DREDI S  LTAL 
Sbjct: 6   KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALS 65

Query: 326 RLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGTA 505
           +LI + +I++  IGRLEVGTETIIDKSKSVK+ LM LF      ++EGID  NACYGG  
Sbjct: 66  QLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGDNH--NVEGIDCVNACYGGVN 123

Query: 506 ALFNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCGVR 685
           ALFN I+W+ESS+WDGR  IVVAGDIA+Y KG ARPTGGAG VA+L+GP+AP+VF+ G+R
Sbjct: 124 ALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLR 183

Query: 686 ASYMTHAYDFY 718
            +YM HAYDFY
Sbjct: 184 GTYMQHAYDFY 194


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 ILAMELYFPSQYVDQTELEKFDEVSTGK 241
           I+  +  + S  +DQT L  F E+ TGK
Sbjct: 375 IILFKCRYQSSEIDQTTLRAFGEICTGK 402


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -2

Query: 678 PQSNTRGASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAV 499
           P  N   A  PI IA  PAP      P P  A+    T   L S         A++ A  
Sbjct: 227 PAVNHPMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQP 286

Query: 498 PP*QALVVSIPSMSVAP 448
            P    + S P+M+V P
Sbjct: 287 VP----MTSSPAMAVVP 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,385
Number of Sequences: 5004
Number of extensions: 56003
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)