Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J22
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...   221   4e-58
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...   221   4e-58
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    30   1.9  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    28   5.8  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   7.7  

>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score =  221 bits (540), Expect = 4e-58
 Identities = 113/193 (58%), Positives = 139/193 (72%), Gaps = 1/193 (0%)
 Frame = +2

Query: 143 VENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTAL 322
           V +VGI A+ELYFP  +VDQ +LEKF+ VS+GKYTIGLGQ +MGFCSD EDI SI LT  
Sbjct: 11  VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVT 70

Query: 323 HRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGT 502
            +LI+  KI+   IG L VGTET+IDKSKSVKT LM LF   G +DIEG+D  NAC+GG 
Sbjct: 71  RKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLF--PGNSDIEGVDIKNACFGGA 128

Query: 503 AALFNAINWVE-SSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCG 679
            AL +AI+WV  +   D + AIVV  DIA+Y +GPAR TGGAGA+A LI PDA +  D  
Sbjct: 129 QALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQ 188

Query: 680 VRASYMTHAYDFY 718
             A +M + +DF+
Sbjct: 189 FSACHMKNTWDFF 201


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score =  221 bits (540), Expect = 4e-58
 Identities = 113/193 (58%), Positives = 139/193 (72%), Gaps = 1/193 (0%)
 Frame = +2

Query: 143 VENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTAL 322
           V +VGI A+ELYFP  +VDQ +LEKF+ VS+GKYTIGLGQ +MGFCSD EDI SI LT  
Sbjct: 7   VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVT 66

Query: 323 HRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGT 502
            +LI+  KI+   IG L VGTET+IDKSKSVKT LM LF   G +DIEG+D  NAC+GG 
Sbjct: 67  RKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLF--PGNSDIEGVDIKNACFGGA 124

Query: 503 AALFNAINWVE-SSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCG 679
            AL +AI+WV  +   D + AIVV  DIA+Y +GPAR TGGAGA+A LI PDA +  D  
Sbjct: 125 QALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQ 184

Query: 680 VRASYMTHAYDFY 718
             A +M + +DF+
Sbjct: 185 FSACHMKNTWDFF 197


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 188 QYVDQTELEKFDEVSTGKYTIGLGQSKMGF-CSDREDINSICLTALHRLIDKQKINLHDI 364
           Q +D+ E +K +++ T   T  +     G  C D   + +I L A   L+  +  N+H  
Sbjct: 799 QILDREEFKKIEKIKTISTTYMVASGLAGRECGDNSHVEAIALFARELLVKLESTNIHSF 858

Query: 365 GRLEV 379
               +
Sbjct: 859 NNFNL 863


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 639 IATAPAPPVGLAGPFP*TAMSPATTMAFLPS 547
           I TA APP+ +A P P  A +PA   A+ P+
Sbjct: 45  IPTAAAPPMMMAPPAPLPAYAPAPLPAYAPA 75


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 398 DKSKSVKTFLMTLFAKEGATDIEGIDTTNAC--YGGTAALFNAINWVESSSW 547
           ++ K +  +L  + A   A+++ G+D T+AC    G   +   +  +  SSW
Sbjct: 222 EEQKIIVEYLAIVLASRLASELRGVDLTHACIDQNGNHVIQQLLKTLPPSSW 273


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = -2

Query: 657 ASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAVPP*QALV 478
           A GPI     PAPP+      P + + P T           + Q +  +    PP     
Sbjct: 77  APGPIRPVVNPAPPLPTLPTPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTTTTT 136

Query: 477 VSIPSMSVAPSLA 439
           +  P+    PS+A
Sbjct: 137 LETPAPESTPSMA 149


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 705 ACVMYEARTPQSNTRGASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLP 550
           A V   A  P   T  A  P+ + TAP P V +  P P    +PA  +  LP
Sbjct: 36  AAVTTTAAPPVVVTTAAPPPVVVTTAP-PVVVVTTPAPVVVPTPAVVVGCLP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,722
Number of Sequences: 27780
Number of extensions: 336796
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)