Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J19
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      118   6e-29
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  118 bits (284), Expect = 6e-29
 Identities = 69/205 (33%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
 Frame = +2

Query: 167 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 346
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 347 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 499
            I+     + +D  +     E Q +I++PTREL  QI + ++    +   K     GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312

Query: 500 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXGFKDXI---- 667
           V     +L +G H++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I    
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372

Query: 668 -HDVFKMLSADVQVILLSATMPDDV 739
            H+    L  + Q ++ SAT PD+V
Sbjct: 373 DHETMVPL-GERQTLMFSATFPDEV 396


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 312 SQELEKLLLSLYRFYNKSIQAFVNV 386
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -1

Query: 587  HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 408
            ++EL++   +  CPPP    S  G    G     C +   H    +E   PS+ +     
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748

Query: 407  WEPGS 393
              PG+
Sbjct: 1749 PHPGN 1753


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 503 GHWCHQCKHGI*HSS 459
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 658 LETXGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 548
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 593 EAHDELSYHIHDLECPPPHEHHSP 522
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +1

Query: 196 PQRRIVERHIRLWF*KTFC----NPATRNNAL 279
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 481 LHWWHQCP 504
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = +3

Query: 9   FFRSATAVETCLIRLKEGQKIGQRIPKMGHRRIKVVTMDLREWTLGHLTPTGIKLSKPS 185
           F R  T + + +  + E   IG++  +   + +++V  ++  +     TP   +L KP+
Sbjct: 192 FHRVCTQIGSSMKSVGEVMAIGRKFEEAFQKALRMVDENINGFDPYVKTPNDEELEKPT 250


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -1

Query: 587 HDELSYHIHDLECPPPHEHHSPVGEYLHGH 498
           H     H H      PH HHS      H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -1

Query: 548 PPPHEHHSPVGEYLHGHW 495
           PP H HH       H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,788
Number of Sequences: 438
Number of extensions: 5560
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)