Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J18
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    98   8e-22
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    36   0.005
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    31   0.19 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.19 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.3  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    27   3.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   7.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.3  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 54/144 (37%), Positives = 78/144 (54%)
 Frame = +1

Query: 208 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 387
           TT + I + +E   L  KK+E LE++I  + + ARK+ T N             +E +L 
Sbjct: 16  TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELV 75

Query: 388 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 567
           +I+G+   IE Q  +++ AN N + L  MR+ A AMK   + +D DKV  IMD I +Q  
Sbjct: 76  KIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQT 135

Query: 568 ISREITEAISNNVAFPNDIXEDEL 639
           IS EI+  IS  V    +I EDEL
Sbjct: 136 ISEEISTMISTPVGLNAEIDEDEL 159


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
 Frame = +1

Query: 220 AIQKLRETEELLIKKQEFLEKKIDLEVQTARK-HGTKNXXXXXXXXXXXXXYEKQLTQID 396
           +I  ++E  + L++  + LEK   LE+  ARK     +             Y   +TQ  
Sbjct: 14  SILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTY 73

Query: 397 GTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISR 576
           G L  IE     +E       V+  ++E  N ++    D+ +++V  I +D  E      
Sbjct: 74  GQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVD 133

Query: 577 EITEAISNNVA 609
           E+ + +   ++
Sbjct: 134 EVNDMLQGRMS 144


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +1

Query: 523  DKVHDIMDDIAEQHDISREI----TEAISNNVAFPNDIXEDEL 639
            DKV +++D+  E  DIS++I    T A+ + V   N I +DE+
Sbjct: 874  DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEV 916


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +1

Query: 229 KLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQIDGTLT 408
           KL E+ + LIKKQE ++  ++  +QT ++   K+               + +  + G   
Sbjct: 669 KLEESNKSLIKKQEDVD-SLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727

Query: 409 QIEAQREALEGANTNAQVLNTM 474
            +EAQR  L  + ++A+  N +
Sbjct: 728 TLEAQRNDLHSSLSDAKNTNAI 749


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 240  NRRIADQEARVFGKEDRFRSTDSQETWH*EQKSC 341
            N +      + F  E RFRSTD    WH  +  C
Sbjct: 918  NNQDESNGTKTFAAEIRFRSTDGHYRWHLVKSVC 951


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   ADGKFSNLSLCMTHTPRNNIELI 75
           ADG++ NLS  + + P N IEL+
Sbjct: 51  ADGEYENLSEILKYDPLNIIELV 73


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 235 RETEELLIKKQEFLEK-KIDLEVQTARKHGTK 327
           ++TEEL ++KQ F+E+ ++ +  Q    H  K
Sbjct: 608 KDTEELTLQKQSFIERDRMQMISQMRNMHDNK 639


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +2

Query: 503 HTKTSMWTKYTI-SWMIL 553
           H+K ++W +YT+ SW++L
Sbjct: 250 HSKNAVWNQYTVASWVML 267


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 370 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 549
           YE+    ++     + AQR  LE     A  L T REA  A + A K     K     + 
Sbjct: 546 YERAQAGVEQERKAVIAQRSLLELRRGQADTLATQREAELAAQRALK----QKQESEAES 601

Query: 550 IAEQHDISREITEAI 594
           +  Q +I++   E I
Sbjct: 602 LRVQEEINKRNAERI 616


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 217 EAIQKLRETEELLIKKQEFLEK----KIDLEVQTARK 315
           E  +KLRE E++  KK + LEK    +I L+ Q  RK
Sbjct: 108 EQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,644
Number of Sequences: 5004
Number of extensions: 50496
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)