Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J18
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.12 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 285 DRFRSTDSQETWH*EQKSCHCSSQAE-EEIREAT 383
           DR++  +S E ++ E K  H   Q E EE  EAT
Sbjct: 177 DRYKEEESNENYNWEHKETHIDWQPEDEECTEAT 210


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104 LCYESADLGLEKNKWFPK*V--FSGKYSVAKKKRRGPLRMKLSKNSVKPKNC 253
           + Y   D+G+  + W    V  F G   +  K RRG L   + +  +   NC
Sbjct: 196 VAYWREDIGINLHHWHWHLVYPFEGDIRIVNKDRRGELFYYMHQQIMARYNC 247



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 460 LGHWYWHLLALPF 422
           L HW+WHL+  PF
Sbjct: 207 LHHWHWHLV-YPF 218


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 316 VSWLSVLLNRSSFPKTLA 263
           +SW+S  LNR++ P  +A
Sbjct: 237 ISWVSFWLNRNATPARVA 254


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 316 VSWLSVLLNRSSFPKTLA 263
           +SW+S  LNR++ P  +A
Sbjct: 237 ISWVSFWLNRNATPARVA 254


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 203 PFSSFLPPNIF 171
           PF  F+PPN++
Sbjct: 375 PFPRFIPPNVY 385


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 316 VSWLSVLLNRSSFPKTLA 263
           +SW+S  LNR++ P  +A
Sbjct: 176 ISWVSFWLNRNATPARVA 193


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 232 LRETEELLIKKQEFLEKKIDLE 297
           LRE  E +I + E ++ K DLE
Sbjct: 296 LRELTEAIIVQAELMDLKGDLE 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,754
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)