Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_J17
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical ... 72 4e-13
AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans N... 54 8e-08
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 36 0.024
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 36 0.024
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 35 0.073
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 28 6.4
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 28 6.4
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 28 6.4
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 28 8.4
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 28 8.4
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 28 8.4
>AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical
protein Y53F4B.3 protein.
Length = 179
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/96 (33%), Positives = 59/96 (61%)
Frame = +1
Query: 400 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKE 579
SEE V E ++ E + ++LP+ R+K +++M+PDV +++++A+ L+ KA E+F++ +
Sbjct: 17 SEEDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNA 76
Query: 580 TYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMD 687
+ KRK + KD++ I K FLE A+D
Sbjct: 77 ANQNAALEKRKTVQTKDIDKAIKKTWAFAFLEDALD 112
>AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans
NFYC-1 protein protein.
Length = 232
Score = 54.4 bits (125), Expect = 8e-08
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Frame = +1
Query: 400 SEEQVHEKKQK-TEVI--------RSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKA 546
+E+ EKKQK TE+ ++ +P+AR+K IM++D DV +++SDA + +A
Sbjct: 82 TEDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQA 141
Query: 547 TEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFL 672
E F+E + + + S +R+++ K D+ + K D FL
Sbjct: 142 AEFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDFL 183
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +1
Query: 238 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 417
P ++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 418 EKKQKTEVIRSTKLPIARIKNIMKMD 495
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +1
Query: 238 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 417
P ++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 418 EKKQKTEVIRSTKLPIARIKNIMKMD 495
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 34.7 bits (76), Expect = 0.073
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 415 HEKKQKTEVIRSTKLPIARIKNIMK--MDPDVNIVSSDAVFLVTKATEMFLETIVKETYA 588
H K + + + LPIA + IMK MDP + + DA + F+ I E
Sbjct: 52 HPNKSQVLLDQERFLPIANVVRIMKTQMDPQAKL-AKDAKECAQECVSEFISFIASEAAE 110
Query: 589 FTSSNKRKVISKKDL 633
+ KRK I+ DL
Sbjct: 111 ICNITKRKTITADDL 125
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 397 NSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAV 528
+ E+ EKK+KTE ++ +LP+ + K +K D D + DAV
Sbjct: 86 SDHEEGEEKKEKTEKVKKEELPV-KAKKEVKEDSDSDSGVEDAV 128
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 259 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 438
SE++ E V I D T ++ N++ KF + NN +L +++ +KK+K E
Sbjct: 12 SEQKRKEKV-IEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDE 70
Query: 439 VI 444
++
Sbjct: 71 LL 72
>Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical
protein C50F4.5 protein.
Length = 123
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +1
Query: 421 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 600
KK+K S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRKHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 601 NKRKVISKKDLELVI 645
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +1
Query: 382 LEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFL 561
LE +L +++V K + ++ S KL A ++ ++ D I+ + AV + +TEM+L
Sbjct: 408 LEQDLKDKKKVLRKALE-QIPSSVKLWKAAVE--LEDPEDARILLTRAVECCSSSTEMWL 464
Query: 562 ETIVKETYAFTSSNKRKVISKKDLELVIDK 651
ETY N RKV++K + D+
Sbjct: 465 ALARLETY----ENARKVLNKAREHIPTDR 490
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 545 ALVTKNTASLDTIFTSGSIF--IMFLILAIGSFVDLI 441
A TKN DT F SIF +M +I AI S VD +
Sbjct: 166 AYCTKNEVKKDTPFWGFSIFLIVMVVIAAIASIVDYV 202
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 232 YKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 384
YK L +S + V IS + SYLE+ H + + T AD N L
Sbjct: 251 YKKVDLTRVSATQVGTGVAISPFFSNVLSYLESSHAIKFIEKLTNADKNTL 301
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 387
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 387
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 387
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 352 TEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVF 531
T+ A +KL E+ ++E +QK S ++ + R KN ++ + V + +
Sbjct: 631 TQQPIALTSKLALEVVPGAIINEVRQKVSPFVSQQIRLPRGKNYIEFEWIVGPIPKETKN 690
Query: 532 LVTKA-TEMFLETIVKETYAFTSSNKRKVISK 624
+TK + + + +FT SN R+ + +
Sbjct: 691 PITKEFVTRYTTEVHSKNQSFTDSNGRQAMER 722
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 387
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 387
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,955
Number of Sequences: 27780
Number of extensions: 259657
Number of successful extensions: 872
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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