Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J12
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...   196   2e-50
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    30   1.7  
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271           30   1.7  
11_01_0623 - 4998236-4999606                                           28   6.8  
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460...    28   9.0  
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...    28   9.0  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score =  196 bits (477), Expect = 2e-50
 Identities = 104/219 (47%), Positives = 132/219 (60%), Gaps = 14/219 (6%)
 Frame = +1

Query: 124 RKLIPELCNQFYHLGWVTGTGGGISIKQGDK--------IYIAPSGVQKERMKANDLFVQ 279
           R+L+ ELC  FY  GWVTGTGG I++K  D         I ++PSGVQKERM A D++V 
Sbjct: 30  RELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVL 89

Query: 280 T----IXXXXXXXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD--K 441
           +    +                + C PLFM AY MR AGAVIH+H       T+L    K
Sbjct: 90  SADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAK 149

Query: 442 VFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVL 621
            F +TH EMIKGIK         Y ++LVVPIIENTP+E +L  SL EA+  YP  +AVL
Sbjct: 150 EFRMTHMEMIKGIKGHG------YRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVL 203

Query: 622 VRRHGVYVWGDTWQQAKTMTECYDYLFEMAVEMKKLXLD 738
           VR HG+YVWGD+W  AKT  ECY YLF+ A+++ +L +D
Sbjct: 204 VRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLYQLGID 242


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 541 ENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTWQQAKTM 678
           ENT  +  L+    E LKE  G S  L+  +G+Y +   W  A  +
Sbjct: 286 ENTRRKSMLSSKWSELLKEDSGHSRFLLSTYGLYAYDTVWMLAHAL 331


>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
          Length = 375

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 304 ILNLHHQLFGQTDHWLSCVPSELLKVQCKFCLLVLLIYHHPCQSPIL 164
           + NL + LF      L   PS L  ++C    ++L  Y+ PC  P L
Sbjct: 192 VKNLGNTLFELLSEGLGLKPSYLTDIECNQGQIILCHYYPPCPQPEL 238


>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 426 CASDCVRRMCMYYSTRIAH 370
           CA D  RR+C YY   IAH
Sbjct: 13  CADDKKRRVCYYYDPGIAH 31


>06_03_0124 -
           16942492-16945032,16945478-16945572,16945966-16946076,
           16946142-16946229
          Length = 944

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 105 IIRGAS*EINS*IMQSILPFRMGDWHGWWYINKTRRQNLHCTFRSSEGTHES 260
           + RGA  E N  + Q + P ++    GW  +   R +NL+C    + G   S
Sbjct: 79  VYRGAQ-ETNRKLYQELFPIQIMQMCGW-LLKVVRWENLNCVHMEAHGNRRS 128


>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 247 PSELLKVQCKFCLLVLLIYHHPCQSPILNGKID 149
           PS+ + V  K C  ++L  H P QS +LN  ++
Sbjct: 251 PSKWIPVLRKICWYLVLAPHDPMQSSLLNATLE 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,295
Number of Sequences: 37544
Number of extensions: 357026
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)