Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J08
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.8  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   4.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   6.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   8.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.5  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 343 SARNEFHFDTIVVRSVIHHKSFYFWKTIQ*APS 245
           S++N   F+  +V + ++ + F  WK I+ +PS
Sbjct: 71  SSKNNKWFNLEIVETELYAEQFKIWKNIELSPS 103


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 484 LVYTVLYIPLIEIGTYVLY 540
           L+Y +L +P+I +GT +LY
Sbjct: 6   LLYRILTLPIILVGTTILY 24


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 LPLSHLNQEQCNELIQSKGFSNNKKS 469
           L  +H N+E+C +L    G+ NN +S
Sbjct: 493 LAAAHRNREKCKKLSVELGYLNNHES 518


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 320 EVKFISGAPPELILLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNK 463
           E +  + A  + +L G  +  L R P   L+    +ELI   G  NNK
Sbjct: 240 EFRVAASAKIQQLLQGNREKFLSRNPSKPLSSVYGSELINQAGDDNNK 287


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 387 RDYLYLISIRNSAMNLYRAKDSQIIKNLTYKLL-SVYGTVH 506
           RDY  +  +R   +N+  A  SQI+ N   + +  + G  H
Sbjct: 522 RDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTH 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,974
Number of Sequences: 5004
Number of extensions: 47545
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)