Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J04
         (771 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MXZ7 Cluster: Cuticle protein; n=1; Bombyx mori|Rep: ...    79   2e-13
UniRef50_P77947 Cluster: Malate synthase; n=9; Bacteria|Rep: Mal...    36   1.1  
UniRef50_Q8WNZ6 Cluster: Sperm protamine-P1; n=6; Coelomata|Rep:...    34   3.4  

>UniRef50_Q8MXZ7 Cluster: Cuticle protein; n=1; Bombyx mori|Rep:
           Cuticle protein - Bombyx mori (Silk moth)
          Length = 407

 Score = 78.6 bits (185), Expect = 2e-13
 Identities = 45/136 (33%), Positives = 45/136 (33%)
 Frame = +3

Query: 138 SFFHGLGYDSNYGSTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTSP 317
           SFFHGLGYDSNYGSTF                                       GYTSP
Sbjct: 29  SFFHGLGYDSNYGSTFGYGSGYQNLGGLGYSGYSSPSVYSSPSSYSYSTPAVSSYGYTSP 88

Query: 318 AVSYANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTP 497
           AVSYAN                                                    TP
Sbjct: 89  AVSYANAGYRYASPAYSYAAPAFSAASYAAPVYSAASYAAPAYSAASYAPAVSSYGYSTP 148

Query: 498 QVRYSSAPAVSYSSFT 545
           QVRYSSAPAVSYSSFT
Sbjct: 149 QVRYSSAPAVSYSSFT 164


>UniRef50_P77947 Cluster: Malate synthase; n=9; Bacteria|Rep: Malate
           synthase - Streptomyces arenae
          Length = 543

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -1

Query: 147 GRSYACHVRPCLLSWRRRQWPRGHKIKTKDLISVDLTVGCRR 22
           G++YA  +RP L SWR   WPRG  +  + L+  D + G RR
Sbjct: 152 GKTYA--LRP-LKSWRPSSWPRGWHLNERHLVDPDGSFGARR 190


>UniRef50_Q8WNZ6 Cluster: Sperm protamine-P1; n=6; Coelomata|Rep:
           Sperm protamine-P1 - Rhinopoma hardwickei (Lesser
           mouse-tailed bat)
          Length = 49

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 665 RRCTRCEIQCCPRRELLCCPGSELLCRRSR 754
           RRC R   +CC RR  +CC      CRR R
Sbjct: 20  RRCRRRRRRCCRRRRRVCCRRYSARCRRRR 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,868,136
Number of Sequences: 1657284
Number of extensions: 2841260
Number of successful extensions: 10237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10209
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)