Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J03
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B624D Cluster: PREDICTED: similar to ubiquitin ...    35   1.6  
UniRef50_A5DNZ0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  

>UniRef50_UPI00015B624D Cluster: PREDICTED: similar to ubiquitin
            protein ligase E3 component n-recognin 4; n=1; Nasonia
            vitripennis|Rep: PREDICTED: similar to ubiquitin protein
            ligase E3 component n-recognin 4 - Nasonia vitripennis
          Length = 4213

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 252  KYTISDFVVLNSLTYSSQASWPKFSSNLKIGKNNV-FVLSNHKKIVIGNSFFN 97
            KYT+ DFVVL+ +   S ASW   +S + +  NNV  VL   K I I +  +N
Sbjct: 1192 KYTMRDFVVLDEVICMSGASWASEASLISLLPNNVRSVLDKWKAINIAHVPWN 1244


>UniRef50_A5DNZ0 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 468

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 289 NFKFYDSKIEI**AFLNIGTVILSL*SNMLQCCCNL 396
           N  F+DSK ++   F  +G V++ L + +L CCC L
Sbjct: 290 NKSFFDSKGKVAGTFTAVGVVVVGLLAGLLYCCCCL 325


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,025,734
Number of Sequences: 1657284
Number of extensions: 12214176
Number of successful extensions: 28664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28652
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)