Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J03
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    28   8.0  
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694...    28   8.0  

>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 261 WKSKYTISDFVVLNSLTYS--SQASWPKFSSNLK 166
           WKS   ISD + LN   YS  SQA W +   ++K
Sbjct: 807 WKSNNKISDSIELNLPPYSFNSQAVWVRIPHSVK 840


>03_04_0076 -
           17068516-17068838,17068897-17069198,17069282-17069435,
           17069506-17069965,17070413-17070492,17070813-17070869,
           17071757-17071838
          Length = 485

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 129 CDLTIQIHYFYQFSDYWKISASWPG*NMSMNLKQQN 236
           C + +  H    + DYW++  +    N  MN  Q N
Sbjct: 307 CPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWN 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,373
Number of Sequences: 37544
Number of extensions: 293843
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)