Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_J03
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho...    29   7.9  
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p...    29   7.9  

>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
            homeodomain protein 2 protein.
          Length = 3005

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 539  VVSVAHPFESASKDCDIIFQNMRKLNRKIQYIKYYVSTSCTF 414
            ++S  H ++   K C + F+   KL   + Y     +T C+F
Sbjct: 1504 IISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDATKCSF 1545


>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
            protein.
          Length = 3005

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 539  VVSVAHPFESASKDCDIIFQNMRKLNRKIQYIKYYVSTSCTF 414
            ++S  H ++   K C + F+   KL   + Y     +T C+F
Sbjct: 1504 IISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDATKCSF 1545


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,158,989
Number of Sequences: 53049
Number of extensions: 553687
Number of successful extensions: 1086
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)