Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I24
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 39 0.003
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 33 0.24
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 33 0.24
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 30 1.3
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 29 2.9
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 29 2.9
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 29 2.9
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 5.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 6.8
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 6.8
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 6.8
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 6.8
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 6.8
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 6.8
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 27 9.0
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 538
I V+GS KED + S F + LP + V ++LT+DG+L + A E K +
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQE 161
Query: 539 NTERV-VPIVETGAPYKK 589
+ + ++ T A +K
Sbjct: 162 GARPIQIKVINTSAEQQK 179
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 365 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 526
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 365 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 526
+QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 75 IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 508
+ + E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 57 LLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 520
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 51 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 520
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 359 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 520
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 503 TAPISENVDKTKNTER-----VVPIVETGAPYKKDEPVXKTTVE-TLDVSTTQEPKTS 658
T ++EN+D+ TE+ PI + +++ TT E T +TT++P TS
Sbjct: 788 TTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTTTTTTTEKTTSKTTTEKPTTS 845
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +2
Query: 434 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVXKTT 613
SLP N+ + + TS + T S ++ + + T + EP T
Sbjct: 375 SLPDNAICSYLDETTTSTTF-TTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLT 433
Query: 614 VETLDVSTTQEPKTS 658
T STT EP TS
Sbjct: 434 TSTASTSTT-EPSTS 447
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +2
Query: 434 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVXKTT 613
SLP N+ + + TS + T S ++ + + T + EP T
Sbjct: 375 SLPDNAICSYLDETTTSTTF-TTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLT 433
Query: 614 VETLDVSTTQEPKTS 658
T STT EP TS
Sbjct: 434 TSTASTSTT-EPSTS 447
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 508 ADQRKC**NEKYRARCTYCRDWRSVQEG 591
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 508 ADQRKC**NEKYRARCTYCRDWRSVQEG 591
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 508 ADQRKC**NEKYRARCTYCRDWRSVQEG 591
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 508 ADQRKC**NEKYRARCTYCRDWRSVQEG 591
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 508 ADQRKC**NEKYRARCTYCRDWRSVQEG 591
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 506 APISENVDKTKNTERVVPIVETGAPYKKDEPVXKTTVETLDVSTTQEPKTS 658
AP +E T TE T P + TTVE + STT E TS
Sbjct: 484 APTTEE-PTTTTTEEPTTTTTTEEPTEAPTEPSPTTVEATEASTTPEASTS 533
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,380,073
Number of Sequences: 27780
Number of extensions: 249547
Number of successful extensions: 853
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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