Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I23
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   3.4  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    26   3.4  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   4.4  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   5.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   5.9  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   7.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   7.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   7.7  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   7.7  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 171 QFFTRKLNARHVKHPGHGFKG 233
           QF  RKL   H KH  HG  G
Sbjct: 213 QFIFRKLGLHHGKHGHHGHSG 233


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 395 IHQEICIIMLKILPTYFMTNESFIILCKFY 484
           +  E+C   L +  T+  +N SFI  CKFY
Sbjct: 148 LSMELCASALHVALTFLKSNGSFI--CKFY 175


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 251 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSN 117
           +LGP   ++A       P IK    K++ F  ++ GS+G   PS+
Sbjct: 115 VLGPIHVYQAF-----YPLIKKGRSKIIVFTSSLAGSMGAFFPSS 154


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -2

Query: 368 ICCFHLLKSMVDIFPFSLI-SSFV 300
           + CFHL+ + + +FP+++I +SFV
Sbjct: 44  LLCFHLVPNALFLFPWTIITTSFV 67


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 R*RREKNDETAN-QRKREDINHGFQQVKTAN*FYLKKISQFIKK 407
           R RRE     AN QR++ D N+  + ++  N  +L+ I ++IKK
Sbjct: 167 RRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKK 210


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -2

Query: 338 VDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSW 213
           V  F F LIS+  I+FP         A   L P  A   + W
Sbjct: 186 VGFFIFWLISNVAIWFPVYQIRHLFTAKSFLAPPAAIAFLIW 227


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 76  KVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMAS 228
           ++AI  ++   + GL     P+DPN+    + S SP  L    +NI+ + S
Sbjct: 307 RIAIFYVVSLILIGL--LISPDDPNLMGNGSTSVSPFVLAIKEANIKGLPS 355


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 82  AIILLILAAVYGLEGAAVPNDPNIFPINAN 171
           A +L I  AV G   +   N PNIFPI  N
Sbjct: 361 AALLSIGVAVEGSSESVAGNLPNIFPIIIN 390


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 AAVPNDPNIFPINANSFSPASLMQGMSNIQDM 222
           AAV NDPN F     S + + L+Q  S+   M
Sbjct: 31  AAVLNDPNAFATTWQSINASQLLQIPSSTYSM 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,308
Number of Sequences: 5004
Number of extensions: 42178
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)